Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq16913 354 9e-93 seq10113 266 4e-66 seq12982 221 1e-52 seq666 163 3e-35 seq12572 150 2e-31 seq12503 105 7e-18 seq12273 95.1 1e-14 >seq16913 Length=117496 Score = 354 bits (392), Expect = 9e-93 Identities = 551/786 (70%), Gaps = 30/786 (4%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 |||| || || || |||||| | || |||||||| ||||| ||||| | || |||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 160927 GGCGTCCTGATGATTC---CCTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTC 160983 || || ||||||| | ||| || ||| || |||| | | | ||| |||||| Sbjct 95170 GGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATC---GCCTTC 95114 Query 160984 GTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATG 161043 | | |||||| || || || || || || |||||||| || || || |||| | | Sbjct 95113 ATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTT 95054 Query 161044 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTC------------------TTCT 161085 ||| ||||||| || || ||||||||| |||| ||| | |||| Sbjct 95053 TATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCT 94994 Query 161086 AACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTC 161145 || ||||| |||| || ||||| || ||| || | ||| | | || |||||| | Sbjct 94993 GTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTA 94934 Query 161146 TACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTAC 161205 || || ||||||||| | || |||| | | || | |||| | | ||| Sbjct 94933 TAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTAT 94874 Query 161206 ATGGGTCGTGAGTGGG-AACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGC 161264 |||||||||||||||| ||||| || ||||||||| | ||| ||||||||| | || Sbjct 94873 ATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGC 94814 Query 161265 ATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGG 161324 ||| || |||||| | || || || ||||| || ||| |||| || || | |||||||| Sbjct 94813 ATATTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGG 94755 Query 161325 TTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTT 161384 |||||| |||| ||||| | || || ||||||| ||||||| || |||| || Sbjct 94754 GAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATT 94696 Query 161385 CCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTT 161444 ||| | |||||||||||| || ||||| | || || ||| | || |||| ||||| || Sbjct 94695 CCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATT 94636 Query 161445 TGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGA 161504 ||||||||| ||||| | ||||| ||||| ||| |||||| || | | || Sbjct 94635 CGGCGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGA 94579 Query 161505 AACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 161564 |||||| ||||| ||||| || | |||||||| || ||||||||||||||||| | Sbjct 94578 AACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATG 94519 Query 161565 CAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 161624 || ||||| ||||| ||||| || || ||||| | || || ||||| ||| | ||||| Sbjct 94518 TAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAA 94459 Query 161625 CAACTC 161630 |||||| Sbjct 94458 CAACTC 94453 >seq10113 Length=56568 Score = 266 bits (294), Expect = 4e-66 Identities = 497/723 (69%), Gaps = 7/723 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||| | | ||| |||| ||| |||||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| ||||| | ||||||||| |||| || |||||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCT 162295 || || ||||||||| || ||| | | ||||||||| | || || ||||| ||||| Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCT 48392 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || | ||||| ||| ||||| || | | | | || ||| | | || ||||||| Sbjct 48391 TAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGG 48332 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 | | || || ||||| || | || || || ||| | || || || |||||||||| Sbjct 48331 GCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTG 48272 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 162474 | || ||||| || || ||| || |||||||||||| | || || ||||||| || | Sbjct 48271 TCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTC 48212 Query 162475 -GACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTG-TATT 162532 | || || | | || ||||| ||||| ||| | ||||| |||| | || | || Sbjct 48211 AGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTT 48153 Query 162533 CGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTT 162592 ||| ||| || ||| | ||||| |||||||||| | |||||| | | | || Sbjct 48152 TGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTT 48093 Query 162593 CGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCT 162652 || | | || || || | |||| | || ||| ||||||| || | ||| |||||| | Sbjct 48092 TGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTT 48033 Query 162653 AAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTAT 162712 ||| || ||||| |||||||| || || || | | || | || |||| | |||| Sbjct 48032 AAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTAT 47973 Query 162713 TCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAA 162772 ||||| | || | ||||| || || | | |||||| || ||||| || || | Sbjct 47972 CCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTA 47913 Query 162773 AGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTG 162832 || | | || | || || | |||||||| ||||| ||| | ||| | ||| |||| || Sbjct 47912 TGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTG 47853 Query 162833 GTC 162835 ||| Sbjct 47852 GTC 47850 Score = 132 bits (146), Expect = 5e-26 Identities = 210/297 (71%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 162831 TGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTC 162890 ||||| || || || ||| || ||||| || || |||||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 162891 TTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAAT 162950 |||| | || || || | | || | | |||| || | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGG-CTAGTTGCCCTGGCTCTGAAC 891 Query 162951 CTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAG 163010 || |||| || || ||| | || || || | ||||| |||||||| ||||| |||||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 163011 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTG 163070 || ||||| || || | |||||| | ||||| || ||| || ||| | ||| | | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 163071 GACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCT 163127 || || |||||||| || || | |||||||| ||||| | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq12982 Length=32303 Score = 221 bits (244), Expect = 1e-52 Identities = 346/494 (70%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||| | | || |||||||| |||| ||||| | || ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || | | | |||| ||||| | | |||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTTATTATCA---CCTTCATCGCTGCT 589 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || |||||||| || || ||||||| | || ||||||||| Sbjct 590 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAAC 649 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 | || |||||||||||| |||| ||| ||| | | ||||| |||| || ||||| Sbjct 650 AGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCA 709 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 || ||| |||| ||| | || |||||| | ||||| || ||||||| | || || Sbjct 710 ATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATT 769 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | || ||| | |||| | | ||| |||| |||||| ||||||||| || | Sbjct 770 GTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTC 829 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 | |||||| ||||| | ||||||| || ||||| || |||||||| || | || | | Sbjct 830 CATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACT 889 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || | ||| || | || ||| | ||||||| ||| ||||||| |||||| | || Sbjct 890 GCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGA 949 Query 161353 ATCTCTGGTACGTT 161366 || |||||||| || Sbjct 950 ATATCTGGTACTTT 963 >seq666 Length=229199 Score = 163 bits (180), Expect = 3e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 162795 GAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCT 162854 |||||||| ||||| ||||||||||| | ||||| ||||| || || || ||| ||||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGCT 152457 Query 162855 TTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGG 162914 ||| || || | ||||| |||||||||||| | ||||| ||||||| ||| | ||| Sbjct 152456 TTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATGG 152397 Query 162915 ACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCT 162974 | ||| |||| || | |||| || ||| | || || ||||||| ||||| | || Sbjct 152396 ATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTCC 152337 Query 162975 CAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTT 163034 || ||| | | ||| || ||||| ||||| |||||||| |||||| | || || ||| || Sbjct 152336 CAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATATTTTT 152277 >seq12572 Length=34890 Score = 150 bits (166), Expect = 2e-31 Identities = 361/537 (67%), Gaps = 12/537 (2%) Strand=Plus/Minus Query 162143 AAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCT 162202 ||| ||||||||||||||| || ||||| || || | || ||||| ||||||| | Sbjct 27223 AAGGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTT 27164 Query 162203 TGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACT 162262 ||| || |||| |||| ||||||||||| || || |||||||||| | Sbjct 27163 CGCTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTT 27104 Query 162263 TGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCA 162320 || ||||||||| | || ||| |||| ||||||| | | |||| ||||| || Sbjct 27103 GGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCC 27046 Query 162321 GACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT---CCTGAGTCTCAAGGGGACTTC 162377 | | | | || ||||| || | |||| | || || | || ||||| || Sbjct 27045 AATAGTTTAGCACA--CTCTT-TGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTT 26989 Query 162378 ATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCA 162437 | || ||||| ||| || | ||||||||||| || ||||| || || |||||| Sbjct 26988 ACTCGTTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCA 26929 Query 162438 CTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC-GACTTATCGGTATTCGTCCTTA 162496 || || ||| ||| | || || |||||||| || | | || || | | | || Sbjct 26928 CTAATTTTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTT 26870 Query 162497 CAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCC 162556 ||||| ||| | ||||| ||||| | ||||| || ||| | |||| ||||| ||||| Sbjct 26869 TAATGCAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCC 26810 Query 162557 TTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 162616 |||||||||| |||||||| | | || || || ||||| || || ||||| Sbjct 26809 ACTGGGACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATT 26750 Query 162617 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGG 162673 | | || ||| || || ||||| ||||| |||| || ||||| |||||||| Sbjct 26749 CATCCTTTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq12503 Length=143431 Score = 105 bits (116), Expect = 7e-18 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||| | || | ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| | ||| | ||||||||| ||| ||||||||||| Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCT-ATCTT 162278 | || ||||||||| || ||| | || ||||||| ||||| Sbjct 88199 ATAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 88241 >seq12273 Length=37008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 161641 CACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 161700 ||||||||| | |||||||||||||| || || |||||||||||||| | || | || Sbjct 29528 CACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGT 29469 Query 161701 ACCATGGCATTCAACCTGAATGGTTTC 161727 || |||||||||||||| ||||||||| Sbjct 29468 ACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547627818497760