Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq16913 297 6e-76 seq12982 223 1e-53 seq8160 89.7 2e-13 >seq16913 Length=117496 Score = 297 bits (328), Expect = 6e-76 Identities = 531/767 (69%), Gaps = 30/767 (4%) Strand=Plus/Plus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || ||||||| || ||||| | || ||||| || || ||||| || || ||| Sbjct 94456 TTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATA 94515 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||| | |||||||||||||| |||||||| || || | || ||||||| ||||| Sbjct 94516 TTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTG 94575 Query 18186 GTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCT 18242 ||||| || || || | |||| | |||| || ||||| | || |||| Sbjct 94576 GTTTCCCTGATCAAACTAGAGG--TTGCCAAG-GAACCATGCAT---AACGCTGAAAGAA 94629 Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || |||||||| || || | ||| | ||| || || | |||||||||||| ||||| || Sbjct 94630 CCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCT 94689 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 | |||||||| | || || |||||| |||| || || | ||||| |||||| ||| Sbjct 94690 ACCTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAG 94748 Query 18363 AAACTCCCTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCG 18422 ||||||||||| |||| || ||||| | || || | |||||||| | || || Sbjct 94749 AAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGC-AAAGGAGCT 94807 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTT-CCCATTGTCG 18481 ||||| |||| | |||||| |||||| |||| || | ||||||||| |||| | || Sbjct 94808 GAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACG 94867 Query 18482 TCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 18541 ||||| ||| || | || | | ||| | | ||||| || | | | || || | Sbjct 94868 ACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACA 94927 Query 18542 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 18601 || |||||||| || || | | ||||| || ||| |||||||| || || | ||||| Sbjct 94928 ATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGAT 94987 Query 18602 TGC-------GT--------TAG---ATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 ||| || ||| || || | || || || ||||| || ||||| Sbjct 94988 TGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTT 95047 Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGC 18703 || ||| ||||| | | || |||||||||||||||||||| || || || |||||||| Sbjct 95048 TCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGC 95107 Query 18704 AGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTAC 18763 ||| | || || || | |||| | || ||||||||| | | | ||||||| | || Sbjct 95108 AGCGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAAC 95167 Query 18764 CCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || ||||| || | ||| || ||||| | || || || | ||||| Sbjct 95168 ACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGT 95214 >seq12982 Length=32303 Score = 223 bits (246), Expect = 1e-53 Identities = 334/467 (72%), Gaps = 8/467 (2%) Strand=Plus/Minus Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 |||||||| || || | ||||||||||||||| ||||| |||| |||| ||| ||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 18387 A-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGG 18445 | | ||||| || || || |||| || || || ||||| |||||| |||||| | Sbjct 903 ATCAAGAAAATAGCAGTAG-CAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAG 845 Query 18446 GCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGA- 18504 ||||||||| || ||||||||||||| | || |||| ||| || | || | Sbjct 844 GCGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAG 785 Query 18505 TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGG 18564 | ||||| || | ||||| || | ||| || || || || |||||||| || || | || Sbjct 784 TAAGAAA-TGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGG 726 Query 18565 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC--GGGACGAT 18622 |||||||| ||| |||||||| || || | ||||| ||| | || | || | || Sbjct 725 ATGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAAT 668 Query 18623 TGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACC 18682 || || || || || |||||||||| | ||| | || || ||||||||||||||||| Sbjct 667 AGCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACC 608 Query 18683 ATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAA 18742 ||| || || || ||||||||||| | || | || | || | | | || |||||| || Sbjct 607 ATCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAA 548 Query 18743 AAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 | | ||||||||| | || |||||||| || | ||| || |||| Sbjct 547 TAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 501 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 2e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA 18125 ||||| || |||| ||| |||||||| | || ||||| || ||||||| || |||||| Sbjct 441 TTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAATCATGAGCAGCCACAATA 382 Query 18126 TTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTC 18185 ||||| ||||||||||||| ||||||| || || | || ||||||| ||| | Sbjct 381 TTATAGGTCTCTTCTTCTTAATCAAATTTGTAACCCTCATTAGCAGACTCATTTTCA-TT 323 Query 18186 GTTTCTCTAAT 18196 ||||| || || Sbjct 322 GTTTCCCTGAT 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151287069146984