Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq16913 289 4e-73 seq10113 233 2e-56 seq12982 183 4e-41 seq666 168 8e-37 seq12572 134 2e-26 >seq16913 Length=117496 Score = 289 bits (320), Expect = 4e-73 Identities = 544/794 (69%), Gaps = 27/794 (3%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| | || ||||| ||||| || ||||| || ||||| ||||| || ||| Sbjct 94453 GAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACG 94512 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 || || |||||||||| ||||| || || |||||||| | || ||| ||| ||||| Sbjct 94513 ATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCA 94572 Query 103523 GTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 || || || | || | | | | || || | | ||||| |||||| | ||||| || Sbjct 94573 GTGGTTTCCCTGATCAAACTA-GAGGTTGCCAAGGAACCATGCATAACGCTGAA---AGA 94628 Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 ||| ||||| || ||||| | || | |||||| || | ||||| || ||||| || || Sbjct 94629 ACCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTC 94688 Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701 | ||||| || | || ||||||| | || || || || ||||||| | ||||||| Sbjct 94689 TACCTGGAATACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGA 94747 Query 103702 GAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGC 103761 ||| |||||||||| | ||| |||||||| || || ||||| |||| |||||| Sbjct 94748 GAAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGC 94806 Query 103762 AGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATT-CCCACTCAC 103820 || ||||| | | ||||| |||||| | ||||||||| | | || ||||||||| Sbjct 94807 TGAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCAC 94866 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | || | | || | || | ||||||||| Sbjct 94867 GACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCAC 94926 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 || || | ||| ||||||| |||||| | || |||||| || || || || | || | Sbjct 94927 AATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGA 94986 Query 103941 TTGC-------GTTGGA-----------GGAGGGAACAACTGCACCAGAGATGATGTTGT 103982 |||| || ||| | |||| || |||||||| || || |||| Sbjct 94987 TTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGT 95046 Query 103983 TACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTG 104042 | | || | | |||| || || || |||||||| || || ||||| || ||||| | Sbjct 95047 TTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAG 95106 Query 104043 CTGCTACGAAAGCAACGATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCA 104102 | || | ||| || | || || | ||||| | || | || ||||||||| | Sbjct 95107 CAGCGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAA 95166 Query 104103 CACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTAT 104162 |||||||||| || | || |||||||| | || || | ||| | |||||||| | Sbjct 95167 CACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGTGAC 95226 Query 104163 CCCACGAGGATTGT 104176 ||||| ||| |||| Sbjct 95227 CCCAC-AGGCTTGT 95239 >seq10113 Length=56568 Score = 233 bits (258), Expect = 2e-56 Identities = 490/725 (68%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 102003 AGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAA 102062 |||||| || | ||| | || | |||||||||||| ||||| |||| || | | | Sbjct 47849 AGACCAAAAGCTGTTAGTAGTGATCATTGAATAAGTTTCTTCAGCTTGAGTTGCGTTACA 47908 Query 102063 TGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACC 102122 || | ||| || ||||| |||| |||||| | |||||||| || | || | || Sbjct 47909 AGCATAGAAGGTATTTGCACCATCATCATCTTTGAATAGAGTGTTTTCTATGGTAGCCCC 47968 Query 102123 GTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGG 102182 ||||| | | ||||| ||| | || | | || ||||| ||||||||||| ||||| Sbjct 47969 ATGGATAGAGCATAGCAGAGCTGCGCCTAATACTCCGGCAACCCCCATCATATGAAATGG 48028 Query 102183 GTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAAC 102242 ||| | |||||| ||| | || || || | ||| || | |||| |||||| || | | Sbjct 48029 GTTTAACGTCCAATTAGGAAATCCTTGGAAGAAAAGGATGAATTGAAATATAACTTCTAT 48088 Query 102243 ACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACT 102302 ||||| || |||||||| ||| || ||||| | ||||| | || || ||| Sbjct 48089 GCCAAAACTCAGCACAAAGAACTAACCAGATTGTCCCATTGGATAAACAAGGAATACAAA 48148 Query 102303 GAC-AAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTA 102361 || ||||||| | | || | |||||| | ||| ||||| || || || | | || Sbjct 48149 AACAAAAAACAATGGTTGGACTAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAG 48208 Query 102362 ACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAG 102421 || ||| || |||||||| | ||||||||| || || ||| || || ||||||| Sbjct 48209 ACTGAGCATGTTCAAATTGACGTAACATGAAACCTATTAGCATAAAAGCCCCATGGAGAG 48268 Query 102422 CCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAG 102481 | ||||||| ||| || || || | ||| || | ||||| || || |||| Sbjct 48269 CGACAAAAGTCCACAGACCACCTAATTGACATCAACGAGTAAAATCCCCCTGTTCTTCCA 48328 Query 102482 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTG 102541 | ||||| ||||| | | ||| || | | | | |||||| || || || |||| Sbjct 48329 GGCCCCATAGTAGTAACAAAGAGTGTGCTAAACTATTAGCAGGAGTGATAACCGCCGCTG 48388 Query 102542 TAAGGAAATTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAA 102597 | | |||||| ||| ||||| | | ||||| | | || ||||||||||| ||| Sbjct 48389 TTAAGAAATT-GCATCCTTCCAAATAGGAACTA---TCCAATCCATGGGTATACCAAGAA 48444 Query 102598 GTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGA 102657 || |||| || || || |||| ||| ||||| | || | ||||||| ||||| || Sbjct 48445 GTTACAAAAGTAGTYCCTGTAAACCAACCCCCTAAAGCAAAATAAGCACAAGGAAAGAGC 48504 Query 102658 AGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATG 102717 | ||| |||||||| | ||||| ||||| | || | | | | |||| |||| || Sbjct 48505 AATAGGCCAGACCATCATACAAAAACAAAATGGTCCCTTCGTAACAAGTCGTCCATAATA 48564 Query 102718 TCAAA 102722 ||||| Sbjct 48565 TCAAA 48569 Score = 150 bits (166), Expect = 2e-31 Identities = 214/297 (72%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 101712 AGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCGAC 101771 |||| | || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 716 AGCGATTCCACATGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTG 775 Query 101772 TGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTC 101831 | ||||| ||| ||| | | ||| ||||| || || || | || |||||||| ||||| Sbjct 776 AGCTGCCATCCACGCATGAATACCCTCATTTAAAAGAATATATTTGGTGTAGAAAGTCTC 835 Query 101832 GAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTT 101891 || || |||||||||||||| | ||| | ||||| | ||| ||||| |||| ||||| Sbjct 836 AAATTCAGGATCTTCTGCTGCACGGATTTTCTGGGA-AGAAA-TCATAGGCACATAGGTT 893 Query 101892 GAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAG 101951 ||||| || ||| | || || | | | || | | || || ||| | |||| || Sbjct 894 CAGAGCCAGGGCAACTA-GCCAATAGCAGTCATCTATAAACTGATTACAAGTACAAGTAG 952 Query 101952 CATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCA 102008 |||||||||||| ||||| | ||||| ||| | || |||||| ||||| ||||| Sbjct 953 CATAAAGAAATGTAACCAACGTTTATTGGAAAAAGAAACACCAAATATTTGGGACCA 1009 >seq12982 Length=32303 Score = 183 bits (202), Expect = 4e-41 Identities = 354/514 (69%), Gaps = 9/514 (2%) Strand=Plus/Minus Query 103667 AAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAG 103726 || || || || || || ||||||||| |||| || || ||||||||| ||||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 103727 ACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGG 103786 | |||||| | || | ||| | ||||||||||| || ||||| ||| ||||| || Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 103787 CGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATG 103846 ||||| |||||| || | | |||||| ||||| ||||||| | | |||| Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 103847 AGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGAT 103906 | ||| || | || | || | ||||||| || || || | ||| ||||||| ||| Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 103907 GCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAG--GGAACAACTG 103964 || |||| |||||| || || || || | || || ||| | || |||| || | Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAATAG 666 Query 103965 CACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGT 104024 |||||||||| || |||| || || || | ||||||| || || |||||||| || | Sbjct 665 CACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCAT 606 Query 104025 CGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCA-GATGGTTGCCGCCAAC 104083 | ||||| || ||||| || || | ||| | | || ||| | | ||||| | ||| Sbjct 605 CAATATCTACTGGAGGAGCAGCGATGAAGGTGATAAT-AAGTACGGAAGTTGCGGTCAAT 547 Query 104084 AGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGAT-GT 104142 | || |||||||||| ||||| ||||| || | || |||||| |||| | | | || Sbjct 546 AAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG-TGTTCGGTGCTAGT 488 Query 104143 AACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 | | | | ||||||| | ||||| ||| |||| Sbjct 487 TATCTAGTTGCAGAAGCGACCCCAC-AGGCTTGT 455 >seq666 Length=229199 Score = 168 bits (186), Expect = 8e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 101821 TAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAA 101880 ||||| ||||| || || |||||||| ||||| ||| || ||||| | |||||| || Sbjct 152293 TAGAAAGTCTCAAATTCAGGATCTTCCGCTGCATGGATTTCCTGGGAAATGAAGTCACAA 152352 Query 101881 GCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACA 101940 ||||| ||||| | ||| || |||| | || || | ||| |||| | ||| | || Sbjct 152353 GCACGTAGGTTCAAAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACG 152412 Query 101941 GGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATT 102000 || ||||| | |||||||||||| ||||| | ||||| ||| |||| |||||||||| Sbjct 152413 GGTACAAATAACATAAAGAAATGTAACCAGCCTTTATTGAGAAAAGCAACACCAAAGATT 152472 Query 102001 TGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 |||||||| || || | || ||||||||||||||||| ||||| |||| || Sbjct 152473 TGAGACCAAAAGCGATAAGCAGTAACCATTGAATAAGTTTCTTCAGCTTGAGT 152525 >seq12572 Length=34890 Score = 134 bits (148), Expect = 2e-26 Identities = 191/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| |||||||| | ||||| ||||| || | ||| || | |||| Sbjct 26693 CCCATCATATGAAATGGGTTTAATGTCCAATTATGAAAAAAAAAGAAGAAAAGGATGAAT 26752 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | |||||| ||||| || ||||| | |||||||||||| || ||||| || ||| Sbjct 26753 CGAAATATAGCTGCTACGCCAAAAAAAAAAACAAAGAACCAACCAGATTGTCCCAGTGGA 26812 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345 || || || || | | ||||||||||||| || |||||||| | ||| ||||| | Sbjct 26813 TAAATAAGGAAAAAAAAAACAAAAACAGCGAACGGACCAGAGAATGAAATTGCATTAAAA 26872 Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCA 102405 | | | || ||| ||| | || |||||||| | ||| ||| ||| || ||| Sbjct 26873 AAAAACAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATAAAAAAAATTAGTGCA 26932 Query 102406 AATGCACCGTGGAGAGCCACAAAAGCCCA 102434 || || || |||||||| ||||||| ||| Sbjct 26933 AAAGCCCCATGGAGAGCGACAAAAGTCCA 26961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633375525710880