Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq16913 250 7e-62 seq12982 170 6e-38 seq8160 98.7 3e-16 >seq16913 Length=117496 Score = 250 bits (276), Expect = 7e-62 Identities = 503/741 (68%), Gaps = 29/741 (4%) Strand=Plus/Plus Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766 |||| |||||||||| ||||| | ||||||||||| ||||||||||| || ||||| | Sbjct 94462 AAAG-TAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATATTACA 94520 Query 21767 AGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTC 21826 |||||||| ||||||||||| |||||||| | || || | | |||||| || || Sbjct 94521 TGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTGGTTTC 94580 Query 21827 ACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAA 21886 | || | || || ||| | ||| |||||| | ||| || || || || Sbjct 94581 CCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAAAGAA---CCGCCGAA 94637 Query 21887 TACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAA 21946 ||| || || | ||| | ||||||||| | ||||||||| || |||||||| ||||||| Sbjct 94638 TACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTACCTGGAA 94697 Query 21947 CACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCC 22006 || | || ||||||| | || ||||| || || |||| | |||| || ||| || Sbjct 94698 TACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGAGAAACTCCC 94756 Query 22007 CTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGC 22066 || |||| | ||||| | ||| |||||| | ||||| || | |||||| || || || Sbjct 94757 TTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGC-AAAGGAGCTGAATATGC 94815 Query 22067 AACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTT-CCCACTCTCGTCCCATGT 22125 || | ||||| || | | | || || || | ||||||| ||||||| || ||||| | Sbjct 94816 AATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGACCCATAT 94875 Query 22126 AAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACA 22185 || | || |||| | || | | || | || | | ||||| | || || | Sbjct 94876 AACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAATTTTATA 94935 Query 22186 GCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGC----- 22240 ||||||||||| | |||| || |||||||||||| || || | |||||| || Sbjct 94936 ACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTGCCACAG 94995 Query 22241 --------------ATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATAC 22286 || |||| |||| | || || ||||| || ||||| | ||| Sbjct 94996 AAGTAGGAATAATAGTTTCTGC-AGGAATAATAGCACCAGATATAATATTGTTTCTATAA 95054 Query 22287 AACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACA 22346 | | || | || || || || || || ||||| || || || || || || | | Sbjct 95055 AGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAGCGATG 95114 Query 22347 AAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAA 22405 |||||||||||||| | || |||| || ||| |||| ||||| | || ||||| Sbjct 95115 AAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGG-ATCATCAAAACACCGAA 95173 Query 22406 CCATCCTACATAAAGACGGTT 22426 |||||| | ||||||||||| Sbjct 95174 CCATCCGATGTAAAGACGGTT 95194 >seq12982 Length=32303 Score = 170 bits (188), Expect = 6e-38 Identities = 324/470 (69%), Gaps = 14/470 (3%) Strand=Plus/Minus Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || ||||| || || |||||| ||||||||||| | || |||| || ||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGC 22082 | | ||| | |||||| ||| | || |||||||| || || ||||||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 22083 CTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATG 22142 | ||| || || | | ||||||||||| || || |||| ||| | || |||| Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 22143 AGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTA 22202 | ||| || | || | || | | |||||||| ||||| | ||||||||||| | Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 22203 GCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG---CATTACTGCTCGGAACGACG 22259 ||||||| |||||||||||| || || | |||||| | ||| | | |||| | Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACATAA---GTAGGAATAATA 667 Query 22260 GCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCA 22319 || || || || || |||| ||||| | | || |||| || || || || || ||| Sbjct 666 GCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCA 607 Query 22320 TCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA-AAC--AAGTTGTAGCGG-C 22375 || || || || || || || | | |||| |||||||| || ||||| |||| | Sbjct 606 TCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTT---GCGGTC 550 Query 22376 AAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGT 22425 || ||| | || ||||| | || || |||||||| | |||||||||| Sbjct 549 AATAAGGTA-GGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 501 >seq8160 Length=957 Score = 98.7 bits (108), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 21695 ACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGC 21754 ||| || || || || |||| |||||||||||| | ||||||||||| | |||||||| Sbjct 448 ACGAGAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAATCATGAGCAGC 389 Query 21755 AACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 |||||||| || |||||||| |||| | |||| |||||||| Sbjct 388 CACAATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146177727268080