Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq16913 264 1e-65 seq12982 152 6e-32 seq10113 127 2e-24 seq12503 93.3 5e-14 seq666 89.7 6e-13 >seq16913 Length=117496 Score = 264 bits (292), Expect = 1e-65 Identities = 535/782 (68%), Gaps = 38/782 (5%) Strand=Plus/Plus Query 124276 TGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTAC 124335 |||||||||||| | |||||| || ||||| | |||||||| |||||||| || || || Sbjct 94452 TGAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCAC 94511 Query 124336 TATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTC 124395 || || |||| ||||||||||| || || || ||||| | || ||||| | || Sbjct 94512 GATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTC 94571 Query 124396 TGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCAT--TGCTGAGAATAAA 124453 || ||||| ||||| | | ||| || | | ||||||||||| |||| ||| Sbjct 94572 AGTGGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTG-----AAA 94626 Query 124454 GATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGC 124513 || || ||||| | || |||| ||| |||||| || | |||||| || ||||| ||| Sbjct 94627 GAACCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGC 94686 Query 124514 TCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCA 124573 ||| | ||||| || | |||||||||||| |||| || || || | |||| |||||| Sbjct 94687 TCTACCTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCG 94745 Query 124574 GAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGT 124633 ||||| || ||||||| | ||| || ||||| ||||| ||||| | | || Sbjct 94746 GAGAAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTG-CAAAGGA 94804 Query 124634 GCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTT-CCCACTG 124692 |||||||| |||| | |||||||| ||| | || | | | | |||| |||||| Sbjct 94805 GCTGAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTC 94864 Query 124693 TCTTCCCATGTATGCTGAAATACCAA-TAAGGAA-GTGGAA-AATTACCAACTGATAAGG 124749 | ||||| || | | ||||| ||| || | ||| |||| | || | |||| Sbjct 94865 ACGACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATT---AGCTCAGAAGG 94921 Query 124750 ACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAG 124809 ||||| ||| || |||||||||||||||| ||| | || ||| |||||||| || || | Sbjct 94922 ACCACAATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAA 94981 Query 124810 TCCGATAGC-------GT-----------TTGATGATGGAACAACTGCACCAGAGATGAT 124851 |||||| || || || || |||| || |||||||| || || Sbjct 94982 TCCGATTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAAT 95041 Query 124852 GTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGG 124911 ||||| | ||| | ||||||| | || || || | || || || ||||| || || Sbjct 95042 ATTGTTTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGG 95101 Query 124912 AGGTGCTGCAATAAATGCAACGATGAAACAT-GCTGCTGCTGTGAGTAAGCATGGAATCA 124970 ||| || || || || || | || ||| || | | ||| || | |||| | |||| Sbjct 95102 AGGAGCAGCGATGAAGGCGATAAT-AAATATGGAAGTTGCGGTTAATAAGGTACGGATCA 95160 Query 124971 TTAGAACACCAAACCAACCAACATAAATTCTGTTGTTTGTTGAT-GTTACCCACTCACAG 125029 | | |||||| ||||| || | |||| | ||| || | || | |||| ||| | ||| Sbjct 95161 TCAAAACACCGAACCATCCGATGTAAAGACGGTT-TTCGGTGCTAGTTATCCAGTTGCAG 95219 Query 125030 AA 125031 || Sbjct 95220 AA 95221 >seq12982 Length=32303 Score = 152 bits (168), Expect = 6e-32 Identities = 315/462 (68%), Gaps = 10/462 (2%) Strand=Plus/Minus Query 124541 AAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTAT 124600 |||||||| || || || | |||||||||||||| || | ||||||| ||||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 124601 ACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGA 124660 | ||||| | ||| ||| | | || || |||||||| |||||| |||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 124661 CGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAA-T 124719 ||||| || | | | |||||||| | | |||| || | | ||||| | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 124720 AAGGAA-GTGGAA-AATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACA 124777 ||| || || ||| ||||| | ||||||||| ||||| || |||||||||||||| Sbjct 783 AAGAAATGTAGAACAATTAGG---TCATAAGGACCGCCATTGTATAACCATTCATCAACG 727 Query 124778 GTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGAT--GATGGAACAA 124835 | ||| |||| ||| |||||||| || || | |||||| ||| || | |||| || Sbjct 726 GATGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAA 669 Query 124836 CTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTC 124895 ||||||||||| || |||| ||||| | |||||||| | || || || | || | Sbjct 668 TAGCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATAC 609 Query 124896 CGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGA 124955 | || ||||| || ||||| || || || || | | || | | | ||| || | Sbjct 608 CATCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCA 549 Query 124956 GTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 |||| || ||||| | |||||||||||| || | |||| Sbjct 548 ATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAA 507 >seq10113 Length=56568 Score = 127 bits (140), Expect = 2e-24 Identities = 245/357 (69%), Gaps = 14/357 (4%) Strand=Plus/Plus Query 123554 TCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTC 123613 |||||||| | | |||||||||||| || ||| | ||||| | || ||||| || Sbjct 48220 TCAAATTGACGTAACATGAAACCTATTAGCATAAAAGCCCCATGGAGAGCGACAAAAGTC 48279 Query 123614 CATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGG 123673 || ||||| || | ||| | |||||| || || ||| |||| | ||||| || Sbjct 48280 CACAGACCACCTAATTGACATCAACGAGTAAAATCCCCCTGTTCTTCCAGGCCCCATAGT 48339 Query 123674 A---ACATGAGACTATG---ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAG 123727 | ||| ||| | || | | ||| | |||| ||| || || ||||||||| Sbjct 48340 AGTAACAA-AGAGTGTGCTAAACTATT-----AGCAGGAGTGATAACCGCCGCTGTTAAG 48393 Query 123728 AAGTTTGCTCCCTCAAGATATGAA-GATGCAATACCATGTGTATACCATGATGTAACGAA 123786 || || ||| || | ||| ||| || |||| ||||| |||||||| || || || || Sbjct 48394 AAATTGCATCCTTCCAAATAGGAACTATCCAAT-CCATGGGTATACCAAGAAGTTACAAA 48452 Query 123787 GGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACC 123846 ||||| ||| |||||||| || | | | ||| |||||||| | || || || || Sbjct 48453 AGTAGTYCCTGTAAACCAACCCCCTAAAGCAAAATAAGCACAAGGAAAGAGCAATAGGCC 48512 Query 123847 AGACCATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 |||||||| || || |||||| | || || |||| ||||||| | || |||||| Sbjct 48513 AGACCATCATACAAAAACAAAATGGTCCCTTCGTAACAAGTCGTCCATAATATCAAA 48569 Score = 104 bits (114), Expect = 3e-17 Identities = 207/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||||| ||| | || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 710 TTAAAAAGCGATTCCACATGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 769 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || || || ||||| | |||||| | || || ||||| Sbjct 770 ATCCTGAGCTGCCATCCACGCATGAATACCCTCATTTAAAAGAATATATTTGGTGTAGAA 829 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||||||||| | || | || || | ||| || || || | Sbjct 830 AGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTCTGGGA-AGAAA-TCATAGGCACA 887 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || | || | || |||| | || | | || || ||| | || Sbjct 888 TAGGTTCAGAGCCAGGGCAACTA-GCCAATAGCAGTCATCTATAAACTGATTACAAGTAC 946 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 | | ||||| ||| ||||| | | ||| || ||||| | | ||||||||| || || Sbjct 947 AAGTAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGAAACACCAAATATTTGGGA 1006 Query 123166 CCA 123168 ||| Sbjct 1007 CCA 1009 >seq12503 Length=143431 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTG 123815 |||| ||||| |||||||| || || | || ||||| |||| |||||||| || | | Sbjct 88225 CAAT-CCATGGGTATACCAAGAAGTTATAAAAGTAGTCCCTATAAACCAACCCCCTAAAG 88167 Query 123816 ATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTC 123875 | ||| |||||||| | || || || || ||| ||||||| || || ||||| || | Sbjct 88166 CGAAATAAGCACAAGGAAAGAGCAATAGGCCGGACAATCCTATAAAAACGAAACGGTCCC 88107 Query 123876 TCTTTAACCAGTCGTCAAGAACATCAAA 123903 | |||||||||||| | || |||||| Sbjct 88106 TTCGTAACCAGTCGTCCATAATATCAAA 88079 >seq666 Length=229199 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 122965 AAGAATGTTCTTCGTATAGAAAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTG 123024 || ||| || || | |||||||||||| || || || ||||| ||||| || || || Sbjct 152277 AAAAATATTTTTGGCATAGAAAGTCTCAAATTCAGGATCTTCCGCTGCATGGATTTCCTG 152336 Query 123025 AGATACAAAGTCGTATGCTCTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGT 123084 || | ||||| | || | ||||| | || || || || | || |||| | Sbjct 152337 GGAAATGAAGTCACAAGCACGTAGGTTCAAAGCCAGGCCAACTACGCCAATAGCACTCAT 152396 Query 123085 CCACATACCCATGACAGGAACGAACAACATAAGGAAGTGTAAGAATCTTTTGTT-AGAAA 123143 ||| | ||| |||| || || || ||||||| ||| ||||| | | ||| || ||||| Sbjct 152397 CCATAAACCGGTGACGGGTACAAATAACATAAAGAAATGTAACCAGCCTTTATTGAGAAA 152456 Query 123144 ATGCGATACCAAATATCTGTGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTT 123203 | || | |||||| || || ||||| || | | || |||| ||| ||||||||||| Sbjct 152457 A-GCAACACCAAAGATTTGAGACCAAAAGCGATAAGCAGTAACCATTGAATAAGTTTCTT 152515 Query 123204 C 123204 | Sbjct 152516 C 152516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578872207298720