Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq16913 329 4e-85 seq10113 244 1e-59 seq12982 203 4e-47 seq666 152 7e-32 seq12572 120 4e-22 seq8160 98.7 1e-15 >seq16913 Length=117496 Score = 329 bits (364), Expect = 4e-85 Identities = 523/748 (70%), Gaps = 24/748 (3%) Strand=Plus/Plus Query 26961 TGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGAC 27020 |||||||||||| | ||||||||| ||||| || ||||| || || || || || || || Sbjct 94452 TGAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCAC 94511 Query 27021 GATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTC 27080 ||| || | ||||||||||||||||| || || ||||| | || |||||| |||| Sbjct 94512 GATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTC 94571 Query 27081 AGTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGA 27140 ||| || || | || | ||| || ||| || |||||| | ||| ||| Sbjct 94572 AGTGGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAA---AGA 94628 Query 27141 TCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTC 27200 || |||||||| ||||| | ||| | |||||| || | ||||||||||| ||||| || Sbjct 94629 ACCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTC 94688 Query 27201 TGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGA 27260 | |||||||||||| || |||| ||| ||||||| || || | ||||| | ||||||| Sbjct 94689 TACCTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGA 94747 Query 27261 GAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGC 27320 |||| |||||||| | || || || | ||| || ||||| ||||| || | ||||| Sbjct 94748 GAAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGC-AAAGGAGC 94806 Query 27321 AGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTT-CCCACTCAC 27379 |||||||| | | ||||| || ||| |||| | ||| | |||| ||||||||| Sbjct 94807 TGAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCAC 94866 Query 27380 GTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCAC 27439 | ||||||||| | | || | | || | | || | || | ||||||||| Sbjct 94867 GACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCAC 94926 Query 27440 CGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGA 27499 || || ||||| ||||| | ||||| | || ||| |||||||| || || | |||| Sbjct 94927 AATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGA 94986 Query 27500 TTGCATTTGAACTTGGGACAA------CT------------GCACCAGAAATGATGTTGT 27541 |||| ||| | || | || || |||||||| || || |||| Sbjct 94987 TTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGT 95046 Query 27542 TGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTG 27601 | | ||| | | |||| || ||| || ||||||||||| |||||||| || || || | Sbjct 95047 TTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAG 95106 Query 27602 CTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTA 27661 | |||||||| |||| ||| || | |||||| | ||| | || ||||||||| | Sbjct 95107 CAGCGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAA 95166 Query 27662 CACCGAACCAACCAACATACAAACGGTT 27689 |||||||||| || | || | |||||| Sbjct 95167 CACCGAACCATCCGATGTAAAGACGGTT 95194 >seq10113 Length=56568 Score = 244 bits (270), Expect = 1e-59 Identities = 497/726 (68%), Gaps = 13/726 (2%) Strand=Plus/Plus Query 23685 GACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAAC 23744 |||||||| | || | || | ||| ||||| || || || | ||||| | | | Sbjct 47850 GACCAAAAGCTGTTAGTAGTGATCATTGAATAAGTTTCTTCAGCTTGAGTTGCGTTACAA 47909 Query 23745 GCTTTAAAAGTGTTTGCCTGTTCTCCATCTTC--ATACAGTGTATTCTCGACAGTAACTC 23802 || | || || ||||| || |||||| ||| ||||| |||| | ||| | | Sbjct 47910 GCATAGAAGGTATTTGCACCATCATCATCTTTGAATAGAGTGTTTTCT--ATGGTAGCCC 47967 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 |||| |||| | || || ||| | || | || || ||||| ||||||||||| || | Sbjct 47968 CATGGATAGAGCATAGCAGAGCTGCGCCTAATACTCCGGCAACCCCCATCATATGAAATG 48027 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAA-ATCGCCGCA 23921 |||| | |||||| ||| |||| || |||| ||| || | ||| ||||| || | | Sbjct 48028 GGTTTAACGTCCAATTAGGAAATCCTTGGAAGAAAAGGATGAA-TTGAAATATAACTTCT 48086 Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 | || |||||| || |||||||| || || ||||||| ||||| | ||||||||| Sbjct 48087 ATGCCAAAACTCAGCACAAAGAACTAACCAGATTGTCCCATTGGATAAACAAGGAATACA 48146 Query 23982 GACAC-GAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAAT 24040 | || || ||| | |||| ||| || | ||| ||||| || || || | | || Sbjct 48147 AAAACAAAAAACAATGGTTGGACTAGAGAATGAAATTGCATTATAAGGCCGCAATTGAA- 48205 Query 24041 TAGAC-GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGA 24099 |||| | || ||||||| ||||||||||| |||||||| || ||| || || |||| Sbjct 48206 CAGACTGAGCATGTTCAAATTGACGTAACATGAAACCTATTAGCATAAAAGCCCCATGGA 48265 Query 24100 GAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACT 24159 |||| ||||| | ||| || || || | ||| || || ||| ||||| || | Sbjct 48266 GAGCGACAAAAGTCCACAGACCACCTAATTGACATCAACGAGTAAAATCCCCCTGTTCTT 48325 Query 24160 CAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTG 24219 | | ||||| ||||| | | ||| || | | | | |||||| || || || | Sbjct 48326 CCAGGCCCCATAGTAGTAACAAAGAGTGTGCTAAACTATTAGCAGGAGTGATAACCGCCG 48385 Query 24220 CCG-TAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACT 24277 | | ||||||| | ||| || || | |||||||||| | | ||||||||| |||||| Sbjct 48386 CTGTTAAGAAA--TTGCATCCTTCCAAATAGGAACTATCCAATCCATGGGTATACCAAGA 48443 Query 24278 CGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAG 24337 || ||||||| || || |||| |||||| || | |||| ||||||| |||| || Sbjct 48444 AGTTACAAAAGTAGTYCCTGTAAACCAACCCCCTAAAGCAAAATAAGCACAAGGAAAGAG 48503 Query 24338 TAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGAT 24397 | || |||||||| | ||||| ||||| | |||| | | | ||||||||| || Sbjct 48504 CAATAGGCCAGACCATCATACAAAAACAAAATGGTCCCTTCGTAACAAGTCGTCCATAAT 48563 Query 24398 GTCAAA 24403 ||||| Sbjct 48564 ATCAAA 48569 >seq12982 Length=32303 Score = 203 bits (224), Expect = 4e-47 Identities = 327/465 (70%), Gaps = 4/465 (1%) Strand=Plus/Minus Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 ||||||||||| || || | ||||||| |||| || ||| ||||||| | ||| || Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 | | ||| | ||| | ||| | || || ||||| |||||||| ||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATA 27405 |||||||| | | | | |||||||| ||||| |||||||| | | || | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 27406 AGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGAT 27465 | ||| || | || | || | ||||||| || || || ||||| ||||| | ||| Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 27466 GCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTG-CATTTGAACTTGGGACAACTGC 27524 || |||| ||| |||||||| || || | ||||| | || | || | || | || || Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACAT-AAGTAGGAATAATAGC 665 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 |||||| || || |||| ||||| || | ||||||| ||| || ||||||||||| || Sbjct 664 ACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATC 605 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCA-GACAGTTGCTGCTAACA 27643 |||||| || || || || |||||||| | || ||| ||| | | |||||| | || | Sbjct 604 AATATCTACTGGAGGAGCAGCGATGAAGGTGATAAT-AAGTACGGAAGTTGCGGTCAATA 546 Query 27644 GTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 || |||||||||| ||||| ||||| || | || | ||||| Sbjct 545 AGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 501 >seq666 Length=229199 Score = 152 bits (168), Expect = 7e-32 Identities = 191/261 (73%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 23474 GCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGC 23533 ||| ||||| || ||||||||||| | ||||| |||||| | | |||||| || || Sbjct 152266 GCCCTTGTTTAA-AAAATATTTTTGGCATAGAAAGTCTCAAATTCAGGATCTTCCGCTGC 152324 Query 23534 ACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCC 23593 | | || || || | || ||| ||||||| || || | ||| || |||| | ||| Sbjct 152325 ATGGATTTCCTGGGAAATGAAGTCACAAGCACGTAGGTTCAAAGCCAGGCCAACTACGCC 152384 Query 23594 AATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACG 23653 ||||| | | ||| | ||| |||| || ||||| ||||||||||| || ||||| | Sbjct 152385 AATAGCACTCATCCATAAACCGGTGACGGGTACAAATAACATAAAGAAATGTAACCAGCC 152444 Query 23654 CTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGA 23713 |||||| ||| ||||| || |||||||| |||||||| |||| || |||||||| || Sbjct 152445 TTTATTGAGAAAAGCAACACCAAAGATTTGAGACCAAAAGCGATAAGCAGTAACCATTGA 152504 Query 23714 ATAGGTCTCCTCCTCCTGAGT 23734 ||| || || || | ||||| Sbjct 152505 ATAAGTTTCTTCAGCTTGAGT 152525 >seq12572 Length=34890 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 23847 CCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAAC 23906 ||||||||||| || ||||| | ||||| |||||||| || ||| || | ||| Sbjct 26693 CCCATCATATGAAATGGGTTTAATGTCCAATTATGAAAAAAAAAGAAGAAAAGGATGAAT 26752 Query 23907 CTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGA 23966 | || || || || || || ||| ||||||||||| || ||||||| ||| Sbjct 26753 CGAAATATAGCTGCTACGCCAAAAAAAAAAACAAAGAACCAACCAGATTGTCCCAGTGGA 26812 Query 23967 TAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAG 24026 || || ||||| | | | || || ||||| | |||||||| || | ||| ||||| | Sbjct 26813 TAAATAAGGAAAAAAAAAACAAAAACAGCGAACGGACCAGAGAATGAAATTGCATTAAAA 26872 Query 24027 GGACGGATTCCAATTAGAC-GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGC 24085 | | | || |||| | || |||||||| ||||||||||||||| || ||||| Sbjct 26873 AAAAACAATTGAAC-AGACCGAGCAAGTTCAAATTGACGTAACATAAAAAAAATTAGTGC 26931 Query 24086 AAAGGCACCGTGGAGAGCAACAAAGGACCA 24115 ||| || || |||||||| ||||| | ||| Sbjct 26932 AAAAGCCCCATGGAGAGCGACAAAAGTCCA 26961 >seq8160 Length=957 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26948 AGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGC 27007 |||| || ||||| ||||||||||| || |||||||||||| || ||||| || || Sbjct 458 AGTGTAAAGAACGAGAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAAT 399 Query 27008 CATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCT 27067 |||| || || || || || |||||||||||||||| | | || || ||||| | || Sbjct 398 CATGAGCAGCCACAATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACCCTCATTAG 339 Query 27068 GTGACTCAGTTTCA 27081 |||||| ||||| Sbjct 338 CAGACTCATTTTCA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665349355495520