Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq13858 123 3e-23 seq277 118 1e-21 seq9779 102 1e-16 seq3708 96.9 4e-15 seq7477 86.0 7e-12 seq9737 82.4 9e-11 >seq13858 Length=133588 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 60216 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 60157 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 60156 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 60097 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 60096 GCTCATCTCCCGCGACGAGGGCCTCCAC 60069 >seq277 Length=113603 Score = 118 bits (130), Expect = 1e-21 Identities = 217/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||| || || |||| || ||| || || || || ||||| Sbjct 22194 GGTGCCAAGATCCCCAAGGGTTGTCTCCTCGTCGGCCCGCCTGGGACAGGCAAAACCCTG 22253 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 ||||| || ||| |||| || || | || |||||| || ||| |||| | | Sbjct 22254 CTCGCGCGTGCCGTCGCCGGGGAGGCCGGGGTGCCATTCTTCTCCTGCGCTGCGTCCGAG 22313 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| |||||| ||||| ||||| ||||| || | ||| Sbjct 22314 TTCGTCGAGCTCTTCGTCGGTGTCGGTGCCTCCAGGGTGCGCGACCTCTTCGAGAAGGCC 22373 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 22374 AAGGCCAAGGCGCCCTGCATTGTCTTCATTGATGAGATTGATGCTGTCGGGAGGCAGCGT 22433 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | || | || || ||||| || || || ||||| || || | | Sbjct 22434 GGTGCCGGACTCGGTGGC--GGTAACGATGAGAGGGAGCAGACTATTAACCAGCTCTTGA 22491 Query 175574 CCGAGATGGATGGCTT 175589 | |||||||||||||| Sbjct 22492 CTGAGATGGATGGCTT 22507 >seq9779 Length=60839 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| ||||| | ||||| ||||| || | | ||| Sbjct 14363 TTTGTGGAGATGTTTGTTGGTGTTGGTGCTTCCCGAGTTCGTGATCTTTTCAAGAAGGCC 14304 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 14303 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 14244 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || ||||| || | || || || | || Sbjct 14243 GGTACAGGTATTGGTGGTGGAAATGATGAAAGGGAACAGACTCTCAACCAGCTGTTGACT 14184 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| |||||||| || | Sbjct 14183 GAGATGGATGGTTTTGAGGGGAACACTGGAGTTATTGTTATTGCTGCCACTAACCGTGCT 14124 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| || | ||| | || || || ||||| Sbjct 14123 GACATCTTGGATTCTGCTTTGCTTAGACCTGGACGCTTTGA 14083 >seq3708 Length=106287 Score = 96.9 bits (106), Expect = 4e-15 Identities = 233/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||||| ||| | |||| | || ||||| || || ||| | | || || || Sbjct 68190 AACTCCTCCACAGTGTGGGACTCCTCAGTGGCGACGACGTAATCACCGGGCTGGTCCTGC 68249 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || |||||||||||||| || || || |||||| ||| |||||||| ||||| ||| Sbjct 68250 TGCAGCATGAGCCACATTGCCTCGACGTAGTCCCCGGCGAACCCCCAGTCCCTGGCGGCG 68309 Query 177685 TTGAGGTTACCGAGTTCAAGGAACT--CTCT-CTCACCTTTCACAATTTGTTTGACGCCA 177741 |||||| ||||| | || || ||| | ||| | || | |||| | Sbjct 68310 GAGAGGTTGCCGAG---GAAGACCTTGGTCTGCAGACCGACCTTGATGCGGCCGACGGCG 68366 Query 177742 TCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGG 177801 || ||||| |||||||||| | || || | || || |||||||||||||| Sbjct 68367 CGGGTGATCTTGCGCGTGACAAAGTTCTCCCCACGGCGTGGGGACTCGTGGTTGAAGAGC 68426 Query 177802 ATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCG 177861 | ||| |||||| | | || |||| || ||||| || | | |||||| ||| Sbjct 68427 ACGCCGTTGCAGGCGAAGAGCCCGTAGGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCG 68486 Query 177862 GCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 || | |||| || | ||| ||| || |||| ||| || || ||||| Sbjct 68487 GCGACCTTGGCTGCGGCGTAGGGGGAGCGCGGGTGGAAAGGCGTGTCCTC 68536 >seq7477 Length=85115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||||| || |||||||| |||| || || |||| | || |||| || Sbjct 75253 GGGACTTTGATTATGACTACTTTGGCTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA-- 75310 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | || | | | |||| |||||| ||||| | ||| |||| || | || || Sbjct 75311 GCTTGGGGGAAAGGTTGTTGAAAGACCACAGCACATGCTAATGAGGGTTTCAGTGGGGAT 75370 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| |||||||||||| |||| | | |||| ||| || ||||| || | ||| Sbjct 75371 ACACAAGGAAGACATTGAGTCTGCCATCAAGACGTACCACCTCATGTCTCAGCGCTGGTT 75430 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | || || |||| || || ||||||||||| ||||| || || || Sbjct 75431 TACACATGCCTCACCGACGCTTTTCAATGCTGGCACACCGAGGCCCCA 75478 >seq9737 Length=173456 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 75142 TGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATC 75199 || ||| |||||| | || || ||||||| | ||||| | || | | | ||| | Sbjct 49801 TGATTATTTTGGTTTTAAGACACTTGAGAGGTCTTATCTGTTGAAAG--TTGGTGGAAAG 49744 Query 75200 CTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGAC 75259 || |||||| |||||| | ||||| ||| | || | | ||||| || ||| || Sbjct 49743 GTCGTGGAAAGGCCACAGCATATGTTGATGAGAGTTTCTGTTGGCATACATAAGGATGAT 49684 Query 75260 ATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAAC 75318 ||||| |||| || ||| ||||| ||| |||||| || | ||||| ||| || | Sbjct 49683 ATTGAATCTG-CTGTCAGAACATACCACATGATGTCTCAGCGCTGGTTCACTCATGCTTC 49625 Query 75319 ACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || ||||| ||||||||||| || ||||| || ||| Sbjct 49624 CCCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAG 49588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596439577655680