Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq16913 298 7e-76 seq12982 159 4e-34 seq8160 116 5e-21 >seq16913 Length=117496 Score = 298 bits (330), Expect = 7e-76 Identities = 537/782 (69%), Gaps = 26/782 (3%) Strand=Plus/Plus Query 8121 GTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 |||||| || | ||||| || |||||||||| |||||| || || |||||||| || || Sbjct 94455 GTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGAT 94514 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||| | |||||||||||||||||||| || ||||| | || |||||| | |||||| Sbjct 94515 ATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGT 94574 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || ||||| | | ||| || | || ||||| |||||| | ||||| || || Sbjct 94575 GGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAA---AGAACC 94631 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||||| | ||| |||| ||| ||| || || | ||||||||| ||||| |||||| | Sbjct 94632 GCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTAC 94691 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||||| | || ||||| || ||||||| || |||| ||||| ||||| ||||| Sbjct 94692 CTGGAATACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGAGAA 94750 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||||| | || || ||||| || || |||||| | | ||||| Sbjct 94751 ACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTG-CAAAGGAGCTGA 94809 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACT--CCCACTGTCTA 8538 |||||| | | ||||| || | | |||| | ||| | ||| | |||||| | | Sbjct 94810 ATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGG-AAACTAAGTTCCCCACTCACGA 94868 Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||| ||| || | |||| | || | | | || | || | | ||||| | Sbjct 94869 CCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAA 94928 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 || || ||||| ||||| | | |||| || |||||| || || || || ||||| || Sbjct 94929 TTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATT 94988 Query 8659 GC-------GTTGGAA-----------GATGGAACGACAGCACCAGAGATGATGTTGTTT 8700 || || |||| | |||| | ||||||||| || || |||||| Sbjct 94989 GCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTT 95048 Query 8701 CCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCA 8760 | ||| | || |||| | |||||| ||||||||||| || ||||| || || |||||| Sbjct 95049 CTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCA 95108 Query 8761 GCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACT 8820 || || || || | ||||| | || || | ||| ||| | | ||||| | ||| Sbjct 95109 GCGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAACA 95168 Query 8821 CCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAACTCACTC 8880 || ||||| |||| ||||| | ||| | || || || | ||| | ||| || | || | Sbjct 95169 CCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGTGACCC 95228 Query 8881 CA 8882 || Sbjct 95229 CA 95230 >seq12982 Length=32303 Score = 159 bits (176), Expect = 4e-34 Identities = 310/458 (68%), Gaps = 0/458 (0%) Strand=Plus/Minus Query 8383 AACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATAT 8442 || |||||||| || |||| |||||| |||||||| || | ||||||| || || Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 8443 ACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGT 8502 | ||||| | || |||| | | || ||||| |||||| ||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 8503 CTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATA 8562 | |||||| | || | | ||||| | | | |||| ||| || | |||| Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 8563 AGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTG 8622 | ||| || | | || | | ||| ||||| || || || ||||| ||||| | | Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 8623 GCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCA 8682 ||||||| |||||| || || || || ||||| || | ||| |||| | |||| Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACATAAGTAGGAATAATAGCA 664 Query 8683 CCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCG 8742 |||||||| || |||||||||| || || ||||| | |||||| ||||||||||| || Sbjct 663 CCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATCA 604 Query 8743 ATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAG 8802 ||||| || || |||||||| || || | | |||| | || || | || ||| Sbjct 603 ATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAATAAG 544 Query 8803 CAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 ||| ||||| | ||| |||||||| |||| ||||| Sbjct 543 GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAG 506 >seq8160 Length=957 Score = 116 bits (128), Expect = 5e-21 Identities = 108/133 (81%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | | ||| ||||||||||||| |||||| || |||||||||| |||| Sbjct 442 GTTGTTGAAACTAGG-ATATTGGAAGATTAATCGACCAAAATAATCATGAGCAGCCACAA 384 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 ||||||||||||||||||||| | |||| || ||||| | || |||||| | |||| Sbjct 383 TATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACCCTCATTAGCAGACTCATTTTCA- 325 Query 8240 TTGTCTCTCTGAT 8252 |||| || ||||| Sbjct 324 TTGTTTCCCTGAT 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615728172789920