Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq16913 293 3e-74 seq10113 230 3e-55 seq12982 206 3e-48 seq666 163 3e-35 seq12572 116 4e-21 seq8160 86.0 7e-12 seq12503 84.2 2e-11 >seq16913 Length=117496 Score = 293 bits (324), Expect = 3e-74 Identities = 531/775 (69%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | |||||||| || |||| ||||| ||| | Sbjct 95222 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| | || | || | |||||| | || || ||||||||||||||||||| Sbjct 95162 GATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCC 95103 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || ||||| || || || ||||| | | ||| | ||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTC-----------TTCCAAC-------GCAATTGG 165989 || || |||||||| || |||| | |||| || ||||| || Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 165990 TCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGG 166049 | || || || || || ||| || | ||||| |||| |||||| | || || |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 166050 TCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGA 166109 ||||| | || |||| | | || | |||| | | || ||||||||||| Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 166110 GTGGG-AACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCAC 166168 ||||| |||| || |||||| |||| ||| || ||||| | |||| || ||||| | Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 166169 CAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTG 166228 | | || ||||| ||||| || ||| | || || || | |||||||| |||||||| | Sbjct 94802 CTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 166229 ATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGC 166288 ||| |||| | ||||| || || | ||||||| || | || ||||| | |||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 166289 ACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTT 166348 |||| || || |||||| | || || ||| | || | ||||| ||||| || || || Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGG---TT 94628 Query 166349 TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAA 166408 || || | |||||| || |||| || ||| | | | || || || ||||||| Sbjct 94627 CTTTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 166409 CCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAG 166468 || || || | |||||||| || || ||||||||||| |||| || ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 166469 CCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 166523 | ||||| ||||| || ||||| || ||||| ||||| ||| | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 230 bits (254), Expect = 3e-55 Identities = 492/726 (68%), Gaps = 11/726 (2%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | || |||| | | |||||| | |||||||||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||||||| ||||| | || |||||| |||| || |||||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 167134 GTCACGAGTTGGTATACTCATGGACTCG--CGTCCAGTTATCTTG-AGGGTGCGAACTTT 167190 || || ||||||||| |||||| | | || | ||| | | ||| ||| | ||| Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTC--CTATTTGGAAGGATGC--AATTT 48394 Query 167191 CTT-ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 ||| || ||||| |||| ||||| || || | | | || ||||| | || ||||| Sbjct 48393 CTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATG 48334 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 ||| | ||| || |||||||| | || ||| | || || || ||| |||| Sbjct 48333 GGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTT 48274 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || ||||| || || ||| || || ||||||||| | || || ||||||| ||| Sbjct 48273 TGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGC 48214 Query 167370 TC-GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG-TC 167427 || | ||| || | || || || ||||| ||| | |||||| |||| | || | Sbjct 48213 TCAGTCTG-TTCAATTGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTT 48155 Query 167428 TTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCC 167487 || ||| || |||||| | ||||| | || ||| | | |||||||| | | Sbjct 48154 TTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGT 48095 Query 167488 TTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACA 167547 || || | | | || || | |||| |||| ||| |||||||||| | || ||||| Sbjct 48094 TTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACG 48035 Query 167548 CTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCA 167607 | || ||||||||||||||||| || || || | | || | || |||| | | Sbjct 48034 TTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCT 47975 Query 167608 ATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTT 167667 |||||||| | ||| |||| || ||| | | |||||| ||| ||||| || || Sbjct 47974 ATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTC 47915 Query 167668 AAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTC 167727 | || | | | ||||| | ||||| |||||||||||| | || | ||| | || Sbjct 47914 TATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTT 47855 Query 167728 TGGTCT 167733 |||||| Sbjct 47854 TGGTCT 47849 Score = 127 bits (140), Expect = 2e-24 Identities = 207/296 (70%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 167728 TGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTA 167787 ||||| || || || || || |||| ||| ||||| ||| | |||||||||||| || Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 167788 TTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAAT 167847 | || | || || | | | || | | |||||| | ||| |||||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 167848 CTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAA 167907 || |||| || |||||| ||| || | ||| | || || || ||||| || ||||| Sbjct 890 CTATGTGCCTATGATTTC--TTCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 167908 ACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATC 167967 |||||||| || ||| | || ||| | ||||| ||| ||| || ||| | ||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 167968 GATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGC 168023 ||||| |||||||| || || | ||||| ||||| ||||| ||| | || | ||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGC 717 >seq12982 Length=32303 Score = 206 bits (228), Expect = 3e-48 Identities = 343/493 (70%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | | | | || ||||| | ||||||| || |||| ||||||||| | Sbjct 472 CTTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || || | ||| | |||||| | | ||| || || ||||||||||||||| Sbjct 532 GATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCATCGCTGCTC 590 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||||||| | || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 || ||||||||||| || |||| ||| | || || | || || || || | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | ||| |||| ||||| |||| |||||| | || || || ||||||| | || ||| Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTG 770 Query 166067 TCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACC 166126 | | || ||| | |||| | | || |||| |||||| |||||||| || || Sbjct 771 TTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCC 830 Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 ||| |||||||| | ||||| |||||| || ||||| || || || | ||| | || Sbjct 831 ATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 890 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | | ||| | | || ||| | ||||||| ||||| ||||||| ||||| | |||| Sbjct 891 CTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAA 950 Query 166247 TCTCAGGAACATT 166259 | || || || || Sbjct 951 TATCTGGTACTTT 963 >seq666 Length=229199 Score = 163 bits (180), Expect = 3e-35 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| ||||||||||||||||| || | || || |||||||| ||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATG 167802 || ||||||| ||| ||| ||||| | ||||||||||||||||| || ||||| | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 167803 GGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGAT 167862 || | |||| | |||||| | |||| |||||| | || || ||||||| || Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 167863 TTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAA 167922 ||| |||| || || ||| || ||||| ||||| || ||||| ||||||||| | ||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 167923 AACAT 167927 || || Sbjct 152285 AATAT 152281 >seq12572 Length=34890 Score = 116 bits (128), Expect = 4e-21 Identities = 191/274 (70%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 167302 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 167361 ||| ||||||| || ||||| || || ||||| || ||| ||| ||| | || || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 167362 GAACTTGCTCGC-CTG----ATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTC 167416 ||||||||||| ||| |||| | | | ||||| ||| | |||||||||| Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTT-----AATGCAATTTCATTCTCTGGTC 26847 Query 167417 CTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCT 167476 | | ||||| || ||| |||||||| | ||||| || || ||| | ||||||| Sbjct 26846 CGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCT 26787 Query 167477 TTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCC 167536 ||| | || || || || || || || |||||| |||| ||| || || | Sbjct 26786 TTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTC 26727 Query 167537 ACAACTGGACACTGAATCCATTTCATATGATGGG 167570 | || |||||| | || ||||||||||||||||| Sbjct 26726 ATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 |||||||| || | |||||||||| || || || || || || ||||||| ||| || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACT 166537 ||||| || ||||||||||| || ||||||||||| || || || |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq12503 Length=143431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | || |||||| | |||||| ||||| |||||| | || | ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||||||| | ||| | || |||||| ||| ||||||||||| Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 167134 GTCACGAGTTGGTATACTCATGGA 167157 | || ||||||||| |||||| Sbjct 88199 ATAACTTCTTGGTATACCCATGGA 88222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561125675998400