Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq16913 250 7e-62 seq12982 170 6e-38 seq8160 98.7 3e-16 >seq16913 Length=117496 Score = 250 bits (276), Expect = 7e-62 Identities = 503/741 (68%), Gaps = 29/741 (4%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| |||| ||| || |||| || Sbjct 95194 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT-CCGTACCTTATTAACCGCAAC 95136 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 | |||||||||||||| | | || || || || || || ||||| || || || Sbjct 95135 TTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGA 95076 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || || | || | | ||| | ||||| || ||||| || || | |||| | Sbjct 95075 GCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCT-G 95017 Query 41440 CAGTAAT-------------------GCCATCGGACTACACTTCTACCCAATTTGGGAAG 41480 ||| || || |||||| | || || |||||||||||| || Sbjct 95016 CAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAA 94957 Query 41481 CTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACT 41540 |||| | ||||||||||| | || || | ||||| | | || | || | | | Sbjct 94956 CTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATT 94897 Query 41541 TCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGG-AACTTAGCTATCGACTAGGG 41599 | | |||| || | ||| ||||| || ||||||| ||||||| | || || || Sbjct 94896 TTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGT 94837 Query 41600 ATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTC 41659 | | | || ||||| | |||| || || |||||| | || ||||| | |||||| ||| Sbjct 94836 ACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTC 94778 Query 41660 CTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGC 41719 | ||||| | |||| || || ||| || |||| | |||| || || ||||| || Sbjct 94777 TTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGT 94718 Query 41720 ACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCAC 41779 | ||||||| || | || ||||||| |||||||| || ||||||||| | |||||| Sbjct 94717 AT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCAC 94659 Query 41780 ATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTG 41839 ||| | ||| | || || ||||| || || || ||| | |||||| ||| | || Sbjct 94658 ATGTTAGGTATAGCTGGTGTATTCGGCGG---TTCTTTCAGCGTTATGCATGGTTCCTTG 94602 Query 41840 GTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAG 41899 | || || | || | || || |||||| | | || || | |||||||| Sbjct 94601 GCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAA 94542 Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 ||||||||||| |||||||| | ||||| || ||||||||||| ||||||||||| | Sbjct 94541 TTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTA 94482 Query 41960 ATCTTCCAATATGCTAGCTTT 41980 ||||| |||||||||| |||| Sbjct 94481 ATCTTTCAATATGCTA-CTTT 94462 >seq12982 Length=32303 Score = 170 bits (188), Expect = 6e-38 Identities = 324/470 (69%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 41262 ACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTACA 41320 |||||||||| | |||||||| || || | ||||| || | ||| ||| |||| | Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGC---A 556 Query 41321 ACTT--GTT-TTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| || |||||||| |||| | | || || || || || || ||||| || || Sbjct 557 ACTTCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 616 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || | | ||||| |||| || || || || || | |||| Sbjct 617 GAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCT 676 Query 41438 AGCAGTAATG---CCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGAT 41494 | | ||| | |||||| | || || |||||||||||| ||||||| | ||||| Sbjct 677 AC---TTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGAT 733 Query 41495 GAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554 |||||| | ||||| |||||||| | | || | || | || ||| | |||| || Sbjct 734 GAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTA 793 Query 41555 TTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATC 41614 | ||| |||| || || ||||||||||| | | || || ||| | | ||||| Sbjct 794 GCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATT 853 Query 41615 TTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT 41674 ||||||| || || |||||||| || | ||| |||||| | ||| | |||| || || Sbjct 854 GTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATT 913 Query 41675 GGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTT 41724 || || | ||||||||||| |||||| || || ||||| || || || Sbjct 914 GGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 98.7 bits (108), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| |||| | |||| |||||||| || |||||||| |||||||| | |||||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGT 41992 ||||| | |||||||||||| |||| || || || || ||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGT 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146184125942944