Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq16913 237 5e-58 seq12982 187 7e-43 seq12273 80.6 8e-11 >seq16913 Length=117496 Score = 237 bits (262), Expect = 5e-58 Identities = 524/775 (68%), Gaps = 38/775 (5%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| ||| || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | || | | || || || |||||| |||| ||||| Sbjct 95170 GGTGTTTTGATGAT-CCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCAT 95112 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| ||||||||||| |||||||| |||||||| ||||| ||| | ||| | || || Sbjct 95111 CGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTA 95052 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC----------------- 42501 | | ||||| || || |||||||| | | ||| |||| ||| Sbjct 95051 TAGAAACAATATTATATCTGGTGCTATTATTCCT-GCAGAAACTATTATTCCTACTTCTG 94993 Query 42502 --GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCT 42559 ||||| ||| | ||||| || | || ||| || | | |||| |||||| | | Sbjct 94992 TGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTAT 94933 Query 42560 ACAATGGCGGACCTTATCAGCTCGTCGTGTTCCA-CTTCCTTA-TCGGTATCTTCTCTTA 42617 | ||| | || |||| | |||| | ||||| | || ||| | ||| | | ||| Sbjct 94932 AAAATTGTGGTCCTTCTGAGCTAAT--TGTTCTATATTTTTTACTTGGTGTAGCTTGTTA 94875 Query 42618 CTTGGGACGCGAAT-GGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676 |||| || || | |||||||| | ||| || || | | | || ||||| | ||| Sbjct 94874 TATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTG 94815 Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 | || || || ||| | || || || | ||| || ||| | || || | |||| |||| Sbjct 94814 CATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAG 94756 Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796 | ||| || ||||| ||||| | || || || |||| |||||||| || | || | Sbjct 94755 GGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTAT 94697 Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTAT 42856 |||||| || || ||||| ||||||||| | || || ||| | ||| | || || |||| Sbjct 94696 TCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTAT 94637 Query 42857 TTGGTGGGTCGTTGTTCTCAGC--TATGCATGGTAGTCTTGTC-ACCTCTTCTCTTGTGC 42913 | || || || | ||||| |||||||||| |||| | |||||| | | | Sbjct 94636 TCGGCGGTTC-----TTTCAGCGTTATGCATGGT-TCCTTGGCAACCTCTAGTTTGATCA 94583 Query 42914 GTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGA 42973 | ||||| |||||||| || ||| | || ||||| || |||||||| || |||| Sbjct 94582 GGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGA 94523 Query 42974 CTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 | | ||| || || || || || ||||| ||||| || | ||||| |||||||| Sbjct 94522 CATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGC 94468 >seq12982 Length=32303 Score = 187 bits (206), Expect = 7e-43 Identities = 327/468 (70%), Gaps = 10/468 (2%) Strand=Plus/Plus Query 42317 ACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACC 42375 |||||||||| | || ||||||||||| ||||||| |||| || | | | || || Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACT 559 Query 42376 ACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAA 42435 || ||||| || | ||||| ||||| ||||| ||||| |||||||| |||||||| Sbjct 560 TCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAG 619 Query 42436 CCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTA-- 42493 ||||| ||||| ||| | | ||||| |||| || ||||||||||| | | |||| Sbjct 620 CCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACT 679 Query 42494 GCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAAT 42553 || ||| || ||| | ||||| || | || ||| |||| || |||| |||| Sbjct 680 TATGTGACG--ATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 42554 GGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCAC-TTCCTTA-TCGGTATCTT 42611 || | ||||||||||| |||||| | || | ||||| || || |||| | ||| | Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAAT--TGTTCTACATTTCTTACTTGGTGTAGC 795 Query 42612 CTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTT 42671 | ||| ||| || || ||||||||| | || || || ||| | | ||||| | Sbjct 796 TTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGT 855 Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||||| || || || ||||| || | || ||||| | ||| | | || || |||| Sbjct 856 TGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGG 915 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTT 42779 |||| |||||| ||||| |||||| | || || || ||||| || Sbjct 916 TCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq12273 Length=37008 Score = 80.6 bits (88), Expect = 8e-11 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 43048 TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGC 43107 ||||| |||||||| | || |||||||| || || ||||| ||||||||| || | || Sbjct 29534 TCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGT 29475 Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTT 43139 | ||||||||||| || ||| | |||||||| Sbjct 29474 ATTAGTACTATGGCATTCAACCTAAATGGTTT 29443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143503081174928