Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq16913 244 3e-60 seq12982 192 2e-44 >seq16913 Length=117496 Score = 244 bits (270), Expect = 3e-60 Identities = 515/763 (67%), Gaps = 24/763 (3%) Strand=Plus/Plus Query 26107 GTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAAT 26166 ||| || ||| | ||||| ||||| ||||||| ||||| || ||||| ||||| || || Sbjct 94455 GTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGAT 94514 Query 26167 ATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGT 26226 |||| |||||||||| ||||| ||||| || || || | ||| || | | || || Sbjct 94515 ATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGT 94574 Query 26227 CGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCC 26286 ||||| || | || || |||| || |||||| | || ||||| | | Sbjct 94575 GGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAAC-GCTGAAAGAAC--C 94631 Query 26287 ACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGC 26346 ||||| || ||||| | ||| ||| || |||| ||||| || || || || ||| | Sbjct 94632 GCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCTAC 94691 Query 26347 TTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAA 26406 |||||||| | |||||||| ||| ||||||| || || | ||||| ||||| || Sbjct 94692 CTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAGAA 94750 Query 26407 ACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGT 26466 ||||||||| || | || ||||| ||||| || || ||| || | | || |||| Sbjct 94751 ACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTG-CAAAGGAGCTGA 94809 Query 26467 ATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTT-CCCACTGTCTCC 26525 |||||||| | ||||| || | | | || || | | || |||| |||||| | | Sbjct 94810 ATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACGAC 94869 Query 26526 CTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCAT 26585 | ||| ||||| || | ||| || | | | ||| || | | | || || | || Sbjct 94870 CCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCACAAT 94929 Query 26586 TGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTG 26645 | |||| ||| || || | | ||| || ||| || ||||||||||| | |||||||| Sbjct 94930 TTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGATTG 94989 Query 26646 CGTTAG-AGGAGG-------------GGACGACT----GCTCCTGATATTATATTGTTTC 26687 | || || ||| | | || | || || ||||| |||||||||| Sbjct 94990 CCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGTTTC 95049 Query 26688 CGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTG 26747 || | ||| || | ||||| |||||||| || ||||| |||||||| || || || | Sbjct 95050 TATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAGCAG 95109 Query 26748 CGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCC 26807 |||||||||| | ||||| | ||| || | | |||| | ||||| | || | Sbjct 95110 CGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAAACAC 95169 Query 26808 CGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 |||||||||| | || |||||||| || || || || | ||| Sbjct 95170 CGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCA 95212 >seq12982 Length=32303 Score = 192 bits (212), Expect = 2e-44 Identities = 333/480 (69%), Gaps = 8/480 (2%) Strand=Plus/Minus Query 26369 AAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAA 26428 ||||||||||| || || | |||||| |||||| |||||| |||| || | ||| ||| Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 26429 ACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGT 26488 | ||||| | || ||| | | | || |||| ||||||||||| ||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 26489 CTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT--GCTACTCCTA 26546 | ||| || || | || |||||||| ||| | | ||||| ||||| || | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCA--GTCACGATCCATATAACAAGCTACACCAA 786 Query 26547 TTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG 26606 |||||| || | | ||| || | ||| || ||||||||||||| ||| || || | | Sbjct 785 GTAAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGG 726 Query 26607 TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG--GGGACGAC 26664 |||||| ||| || ||||||||||| | |||||| ||| | | || || | | Sbjct 725 ATGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGAT--CGTCACATAAGTAGGAATAAT 668 Query 26665 TGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCC 26724 || || || || ||| ||||||| || ||||| || || ||||| |||||||| || || Sbjct 667 AGCACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACC 608 Query 26725 ATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAG 26784 ||| |||||||| || || || |||||||||| | |||| | ||| || | | Sbjct 607 ATCAATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAA 548 Query 26785 TAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 |||| || ||||| | || || |||||||| | || ||||||| || || || || Sbjct 547 TAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTGTTCGGTGCTAGT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147681415861120