Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq16913 324 2e-83 seq12982 212 7e-50 seq11770 104 3e-17 >seq16913 Length=117496 Score = 324 bits (358), Expect = 2e-83 Identities = 541/777 (70%), Gaps = 30/777 (4%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 95220 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 95161 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||| | | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 95160 TGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTC 95101 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || || |||||||| | ||| | ||||| | Sbjct 95100 CGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATA 95041 Query 155150 TCATCTCTGGTGCTGTTGTCCCT--AG---------TTCAAAC-------GCAATTGGTC 155191 | || ||||||||| || | ||| || ||| || ||||| || Sbjct 95040 TTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGAT 94981 Query 155192 TCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTC 155251 | || || || || |||||| || | ||| || ||||||| ||||| || ||| |||||| Sbjct 94980 TGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTC 94921 Query 155252 CTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTC 155308 ||| | || | || | | || | | || | ||| | | | |||||| Sbjct 94920 CTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTG 94864 Query 155309 AGTGGG-AACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 155367 |||||| ||||| || |||||| || | ||| |||||||| | ||||||| || || Sbjct 94863 AGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCT 94804 Query 155368 CCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 155427 || | | ||||| ||||| ||| | ||||| || | |||||||| |||||| Sbjct 94803 CCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCC 94745 Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| ||||| | || || ||||||| ||| |||| ||| | || ||||| | ||| Sbjct 94744 GATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAG 94686 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCT 155547 ||||| ||||||||||| | || |||||| | || |||| ||||| ||||| || ||| Sbjct 94685 CACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT 94626 Query 155548 CTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAG 155607 ||| | |||||| ||||| |||| || ||| | ||| | ||||| ||||| Sbjct 94625 ---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAA 94569 Query 155608 CAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTT 155667 | |||||| || | |||||||| || || ||||||||||| || | ||| || || Sbjct 94568 AATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTG 94509 Query 155668 GCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCA 155724 |||||||| || || || ||||| | ||||| || ||||| | |||||||||||| Sbjct 94508 GCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 212 bits (234), Expect = 7e-50 Identities = 322/453 (71%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 155009 TCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACA-TGCTTCATT 155067 |||| ||||| |||||| | ||||||||| | | | | || || | | ||| ||| Sbjct 513 TCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATT 571 Query 155068 GTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGT 155127 || ||||||| ||||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 572 ATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 631 Query 155128 TCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATT 155187 |||||||| ||||| |||| || |||||||||||| || | |||| || | || Sbjct 632 TCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATC 691 Query 155188 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGT 155247 || | || || || || |||||| |||| ||| | ||||||| ||||| |||||||| Sbjct 692 GGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGC 751 Query 155248 GGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGG-TCG 155306 ||||||| | || | || | || ||| | | || | | || | ||| ||| Sbjct 752 GGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTA-TATGGATCG 810 Query 155307 TCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 155366 | | ||||||||| || || ||| || ||||| | |||||| ||||||||| || || Sbjct 811 TGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGC 870 Query 155367 ACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTC 155426 || || | | ||| ||| | ||| | |||| ||| | ||||||| ||| || Sbjct 871 TCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTC 930 Query 155427 TGATGCGATGCCTCTTGGTATCTCTGGTACTTT 155459 ||||| |||||| | || || ||||||||||| Sbjct 931 TGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq11770 Length=261943 Score = 104 bits (114), Expect = 3e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| Sbjct 78423 TTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGTTTGTC 78482 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 ||||||||||| | ||| | ||||| || |||||| |||| || | ||| ||| Sbjct 78483 TCTGGTTCTTTACTTTATAGAAACAATATTATCTCTATTGCTATTATTTCTACTTCTGCA 78542 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACT 155223 | |||| | || || | || ||||| ||||| ||| || Sbjct 78543 GGGATTGAATTGCATTTTCACCCAATTTGAGAAGCTGCATCT 78584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584707735168160