Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq16913 313 7e-81 seq12982 210 6e-50 >seq16913 Length=117496 Score = 313 bits (346), Expect = 7e-81 Identities = 541/776 (70%), Gaps = 34/776 (4%) Strand=Plus/Plus Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| | |||||||||||| |||| || |||||| |||||||| ||||| ||||| Sbjct 94456 TTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACGATA 94515 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 ||| | ||||| |||| |||||||| || || || | || || ||| |||| ||| Sbjct 94516 TTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCAGTG 94575 Query 40884 GTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| || | | |||| | ||||| || |||||| | || |||| | Sbjct 94576 GTTTCCCTGATCAAACTAGAGG--TTGCCAAGG-AACCATGCATAAC-GC--TGAAAGAA 94629 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || | || | ||| || |||| ||||| || |||||||| ||| Sbjct 94630 CCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCT 94689 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 | ||||| |||| || |||||||| | ||| ||||||||||||| |||||| ||| Sbjct 94690 ACCTGGAATACAATTATAAAGTTGAA-ATACCAGATATTCCTAAAGGCACACCATCGGAG 94748 Query 41061 AAAGAACCCTGACCGAATGGA-TAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 ||| || ||||| ||| || ||||| ||||| ||||| ||| |||| ||| ||||| Sbjct 94749 AAACTCCCTTGACC-AATAGAGTAAACCAAGAAAACAGCACTAGCAGCTG-CAAAGGAGC 94806 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTT-CCCACTGTC 41178 || ||||| | | ||||| || | | |||| || | | | ||||| |||||| | Sbjct 94807 TGAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCAC 94866 Query 41179 TACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGC 41238 ||| || ||||| || | |||||| | | ||||| || | | | || || | Sbjct 94867 GACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGACCAC 94926 Query 41239 CGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGA 41298 || |||| ||| || || | | | | || ||| |||||||| ||||| | ||||| Sbjct 94927 AATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCCGA 94986 Query 41299 TTGCGTTAGAGCT------------------CGGAACGACAGCTCCAGATATAATATTGT 41340 |||| ||| | |||| | ||| |||||||||||||||| Sbjct 94987 TTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATTGT 95046 Query 41341 TCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTG 41400 | | || | ||| || | ||||| |||||||| || ||||| |||||||| || || | Sbjct 95047 TTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGGAG 95106 Query 41401 CTGCGATAAAGGCGATTATGAAACAT-GTGGTAGCAGTTAGTAATGCTGGAATCATTAGC 41459 | ||||| |||||||| || ||| || | || || |||| ||| | | ||||| | Sbjct 95107 CAGCGATGAAGGCGATAAT-AAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAAA 95165 Query 41460 ACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| ||||| || | ||| || ||||| ||||||||||| | |||||| || || Sbjct 95166 ACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 95221 >seq12982 Length=32303 Score = 210 bits (232), Expect = 6e-50 Identities = 334/479 (70%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||||||||||||||||||| ||| | ||||| | || |||| ||||| | | Sbjct 951 ATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAAATCAAGAAAATA 892 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| ||| | ||||||| ||||| |||| ||||| | | |||||| || Sbjct 891 GCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGGCGCATACCCAGA 832 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAG 41216 | | ||||||||| | | | | || ||||| || | ||| || || | Sbjct 831 TGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGTAAGAAATGTAGA 772 Query 41217 ACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAG 41276 ||||| || | ||| || ||||| ||||||| ||| || || | | | |||| ||| Sbjct 771 ACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCAGCTTTCCAA 712 Query 41277 ATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATA 41336 |||||||| ||||| | |||||| | | | | |||| | ||| ||||| |||||| Sbjct 711 ATTGGGTAAAAATGCAATCCGATCGTCACATAAGTAGGAATAATAGCACCAGAGATAATA 652 Query 41337 TTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGC 41396 |||| || || ||||| || || ||||| |||||||| || ||||| |||||||| || Sbjct 651 CTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 592 Query 41397 GGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATT 41456 || || ||||| |||| ||| || | | || || || | ||| | || ||||| Sbjct 591 GGAGCAGCGATGAAGGTGATAATAAGTACGGAAGTTGCGGTCAATAAGGTAGGGATCATC 532 Query 41457 AGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||||||||| || | ||| || |||| ||||||||||| | | |||| || || Sbjct 531 AAAACACCAAACCATCCGATGTAAAGACGGTGTTCGGTGCTAGTTATCTAGTTGCAGAA 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143672646058824