Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq16913 297 2e-75 seq12982 159 4e-34 seq8160 89.7 6e-13 >seq16913 Length=117496 Score = 297 bits (328), Expect = 2e-75 Identities = 513/739 (69%), Gaps = 36/739 (5%) Strand=Plus/Plus Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 |||||||||||||| ||||| || ||||| || ||||| || || || |||||||| || Sbjct 94452 TGAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCAC 94511 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 || || | |||||||||||||| || || |||||||| | || ||||| | || Sbjct 94512 GATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTC 94571 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 ||| ||||| ||||| | | ||| || | | ||||| |||||| | || || || Sbjct 94572 AGTGGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCT---GAAAGA 94628 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 ||| ||||||||||| |||| || | ||| || |||| |||||||||||||||||||| Sbjct 94629 ACCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTC 94688 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 | | ||||| || | || |||| ||| ||||||| || || | ||||| | || || Sbjct 94689 TACCTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGA 94747 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 |||| |||||||| | || || |||||||| ||||| || || | || ||||| Sbjct 94748 GAAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTG-CAAAGGAGC 94806 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTT-CCCACTGAC 68007 || ||||| | | |||||||| ||| |||| |||||| || ||||| |||||| || Sbjct 94807 TGAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCAC 94866 Query 68008 GACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTC 68064 |||| | | | ||| | || | | || | | || | || | |||| | Sbjct 94867 GACCCATATAACAAGCT---ACACCAAGTAAAAAATATAGAACAATTAGCTCAGAAGGAC 94923 Query 68065 CACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGAC 68124 ||| ||| || ||||| ||||| | || ||| | || ||| || || || || || | | Sbjct 94924 CACAATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATC 94983 Query 68125 CGATTGC-------GTTTGAA---------CT--AGGAACAACAGCACCAGAAATGATGT 68166 ||||||| || ||| || ||||| || ||||||||| || || | Sbjct 94984 CGATTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATAT 95043 Query 68167 TGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAG 68226 |||| | || | | |||| | |||||| || | |||||||| ||||| || |||| Sbjct 95044 TGTTTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAG 95103 Query 68227 GTGCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCA 68283 | || || ||||| || || || || | ||||||| | | | ||| | | |||| Sbjct 95104 GAGCAGCGATGAAGGCGATAATAAATATGGAAGTTGCGGTT---AATAAGGTACGGATCA 95160 Query 68284 TCAACACACCGAACCAACC 68302 |||| ||||||||||| || Sbjct 95161 TCAAAACACCGAACCATCC 95179 >seq12982 Length=32303 Score = 159 bits (176), Expect = 4e-34 Identities = 309/451 (69%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 67854 AAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 67913 ||||||||||| || || | |||||| | ||||| ||| ||||||| | ||| || Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 67914 ACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGA 67973 | |||||| | ||| || | | || ||||| || ||||| ||| |||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 67974 CGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA-CCACAGTATGCTGTGATTCCGAT 68032 |||||||| ||| || || ||||||||| | |||| ||| | || | | || | Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATA-TAACAAGCTACACCAAG 785 Query 68033 AAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGT 68092 | ||| || | || | || | |||| || ||||| || ||||| ||||| | | Sbjct 784 TAAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGA 725 Query 68093 TGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGC 68152 ||| |||| ||| || || || || || | ||||| | || |||||| || ||| Sbjct 724 TGCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACATAAGTAGGAATAATAGC 665 Query 68153 ACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATC 68212 |||||| || || |||| || || || | ||||| | |||||| || | |||||||| Sbjct 664 ACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATC 605 Query 68213 GATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA-AGTTGCTGCTGCGAGCA 68271 ||||| |||||||| || || ||||| | || || ||| | | | ||| | | | Sbjct 604 AATATCTACTGGAGGAGCAGCGATGAAGGTGATAAT-AAGTACGGAAGTTGCGGTCAATA 546 Query 68272 AGCAAGGAATCATCAACACACCGAACCAACC 68302 || ||| |||||||| ||||| ||||| || Sbjct 545 AGGTAGGGATCATCAAAACACCAAACCATCC 515 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 |||||||||||| | ||| |||||||| || ||||| || || |||||||||| ||| Sbjct 444 GAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAATCATGAGCAGCCACA 385 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || || ||||||||||||| | || |||||||| | || ||||| | ||| Sbjct 384 ATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACCCTCATTAGCAGACTCATTTTCA 325 Query 67710 GTAGTTTCTCTGAT 67723 | ||||| ||||| Sbjct 324 -TTGTTTCCCTGAT 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566823633857760