Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq16913 351 1e-91 seq12982 242 4e-59 seq10113 241 1e-58 seq666 183 3e-41 seq12572 141 1e-28 seq12273 100 3e-16 seq11770 91.5 2e-13 seq8160 91.5 2e-13 >seq16913 Length=117496 Score = 351 bits (388), Expect = 1e-91 Identities = 545/777 (70%), Gaps = 30/777 (4%) Strand=Plus/Plus Query 68071 GAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACA 68130 ||||||||||| | ||||| || ||||| | ||||| || || || || ||||| || Sbjct 94453 GAGTTGTTGAAAGTAGCATATTGAAAGATTAATCGACCAAAATAACCGTGAGCAGCCACG 94512 Query 68131 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCA 68190 || || | ||||||||||||||||| || |||||||| | || |||||| ||||| Sbjct 94513 ATATTACATGTCTCTTCTTCTTGACCAAATTTGTAACCTTCATTAGCAGACTCATTTTCA 94572 Query 68191 GTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGAT 68250 |||||||| | | || ||| || ||| |||||||||||| | ||||| ||| Sbjct 94573 GTGGTTTCCCTGATCAAACTAGAGGTTGCCAAGGAACCATGCATAACGCTGAA---AGAA 94629 Query 68251 CCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCT 68310 || || ||||| ||||| | || | ||| || || | ||||| ||||||||||||||| Sbjct 94630 CCGCCGAATACACCAGCTATACCTAACATGTGAAATGAATGCATAAGGATGTTGTGCTCT 94689 Query 68311 GCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAG 68370 | ||||| || | || |||||||| ||||||| || || | ||||| | || ||| Sbjct 94690 ACCTGGAATACAATTATAAAGTTGAAA-TACCAGATATTCCTAAAGGCACACCATCGGAG 94748 Query 68371 AACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCA 68430 || |||||||| | || || |||| ||| || || || ||||||| ||| || Sbjct 94749 AAACTCCCTTGACCAATAGAGTAAACCAAGAAAACAGCACTAGCAGCTGCAA-AGGAGCT 94807 Query 68431 GAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTT-CCCATTCACG 68489 || ||||||| | |||||||| ||| |||| ||||| | ||||| |||| ||||| Sbjct 94808 GAATATGCAATAGCAATCCAAGGGCGCGTACCCAGACGGAAACTAAGTTCCCCACTCACG 94867 Query 68490 TCCCATGTATGCAAAGATACCAATCAGGAAGT---GAAAGATTACGAGTTGGAAAGGACC 68546 ||||| || | | ||||| | || | ||| ||| || | ||||||| Sbjct 94868 ACCCATATAACAAGCTACACCAAGTAAAAAATATAGAACAATT---AGCTCAGAAGGACC 94924 Query 68547 ACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACC 68606 || ||| || ||||| ||||||| | ||| | || |||||| || ||||| || | || Sbjct 94925 ACAATTTTATAACCATTCATCAACAGATGCAGTTTTCCAAATTGGGTAAAAATGCAATCC 94984 Query 68607 AATTGCATTTGAACT------------------AGGAACAACAGCACCAGAAATGATGTT 68648 ||||| ||| | ||||| || ||||||||| || || || Sbjct 94985 GATTGCCACAGAAGTAGGAATAATAGTTTCTGCAGGAATAATAGCACCAGATATAATATT 95044 Query 68649 GTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGG 68708 ||| | ||| || | |||| || |||||| |||||||||||||| || || || || || Sbjct 95045 GTTTCTATAAAGTAAAGAACTAGAAACAGGCTCACGAATACCATCAATATCTACCGGAGG 95104 Query 68709 AGCAGCGATGAAGGCGACGATGAAACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAG 68768 ||||||||||||||||| || || | ||||| | | | ||| ||||||||| Sbjct 95105 AGCAGCGATGAAGGCGATAATAAATATGGAAGTTGCGGTTAATAAGGTACGGATCATCAA 95164 Query 68769 GACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 || |||||||| || | |||||| ||||| || ||| ||| | ||| | |||||| Sbjct 95165 AACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 95221 >seq12982 Length=32303 Score = 242 bits (268), Expect = 4e-59 Identities = 355/494 (72%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 68335 AAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAG 68394 ||||||||||| || || | |||||| | ||||| || ||||||| | ||| || Sbjct 963 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAAAAACTTTCTTGACCAATAGGGTAA 904 Query 68395 ACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGA 68454 | || ||| | || | || |||||||||| || || ||||||||| |||||| | Sbjct 903 ATCAAGAAAATAGCAGTAGCAACTGCAACAGGAGCTGAATATGCAACAACAATCCAAAGG 844 Query 68455 CGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATC 68514 |||||||| ||| | | ||||||||| ||||| |||| || | | ||||| Sbjct 843 CGCATACCCAGATGGAAACTAAGTTCCCAGTCACGATCCATATAACAAGCTACACCAAGT 784 Query 68515 AGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTT 68574 | ||| || | | | || | ||||||| |||||||| ||||| ||||||| || | Sbjct 783 AAGAAATGTAGAACAATTAGGTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 724 Query 68575 GCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTG-CATTTGAACTAGGAACAACAGC 68633 || |||| |||||| || ||||| || | || || | || | || |||||| || ||| Sbjct 723 GCAGCTTTCCAAATTGGGTAAAAATGCAATCCGATCGTCACAT-AAGTAGGAATAATAGC 665 Query 68634 ACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATC 68693 |||||| || || |||| ||||| | | ||||||| |||||| |||||||||||||| Sbjct 664 ACCAGAGATAATACTGTTTCCATAAATTAAAGAACCAGAAACAGGCTCACGAATACCATC 605 Query 68694 GATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGA-AACAGATGGTTGCTG-CAAGC 68751 || || || || |||||||||||||||| || || | || || ||||| | ||| Sbjct 604 AATATCTACTGGAGGAGCAGCGATGAAGGTGATAATAAGTACGGA-AGTTGCGGTCAATA 546 Query 68752 AGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTC 68811 || ||||||||||||| || || ||||| || | |||||| |||| || ||| ||| Sbjct 545 AG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTGTTCGGTGCTAGTT 487 Query 68812 ACCCATTCGCAGAA 68825 | | | | |||||| Sbjct 486 ATCTAGTTGCAGAA 473 >seq10113 Length=56568 Score = 241 bits (266), Expect = 1e-58 Identities = 472/690 (68%), Gaps = 11/690 (2%) Strand=Plus/Plus Query 66884 AGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAA 66943 |||||| |||| ||| | ||| | |||||| ||||||||||| ||||||| | || | Sbjct 47849 AGACCAAAAGCTGTTAGTAGTGATCATTGAATAAGTTTCTTCAGCTTGAGTTGCGTTACA 47908 Query 66944 TGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACC 67003 || | ||| || ||||| ||| |||||| | ||||| || |||| ||| | || Sbjct 47909 AGCATAGAAGGTATTTGCACCATCATCATCTTTGAATAGAGTGTTTTCTATGGTAGCCCC 47968 Query 67004 ATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGG 67063 ||| || | | |||| || | || | | || || || |||||||||||||| || Sbjct 47969 ATGGATAGAGCATAGCAGAGCTGCGCCTAATACTCCGGCAACCCCCATCATATGAAATGG 48028 Query 67064 GTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGAC 67123 ||| || ||||| ||| | |||||||| | ||| || | |||| |||| || || | Sbjct 48029 GTTTAACGTCCAATTAGGAAATCCTTGGAAGAAAAGGATGAATTGAAATATAACTTCTAT 48088 Query 67124 CCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACT 67183 || ||| | | || ||| ||| ||||| |||| || || | || || ||| Sbjct 48089 GCCAAAACTCAGCACAAAGAACTAACCAGATTGTCCCATTGGATAAACAAGGAATACAAA 48148 Query 67184 AAC-AAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGA 67242 ||| ||||||| | | |||| |||||| | ||| ||||| || || || | | || | Sbjct 48149 AACAAAAAACAATGGTTGGACTAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACA 48207 Query 67243 GAC-GTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 ||| | || ||||||| || || | ||||||||| ||||| |||||||| ||||| Sbjct 48208 GACTGAGCATGTTCAAATTGACGTAACATGAAACCTATTAGCATAAAAGCCCCATGGAGA 48267 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || |||||| |||| || || || | ||| || || ||||||||||| || Sbjct 48268 GCGACAAAAGTCCACAGACCACCTAATTGACATCAACGAGTAAAATCCCCCTGTTCTTCC 48327 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 | ||||| ||||| | | ||| || | | | || |||||| || || |||||| Sbjct 48328 AGGCCCCATAGTAGTAACAAAGAGTGTGCTAAACTATTAGCAGGAGTGATAACCGCCGCT 48387 Query 67422 GTGAGAAAATTAGCA-CCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCT 67477 || | ||||| ||| || || | || ||||| | | ||| || || ||||| Sbjct 48388 GTTAAGAAATT-GCATCCTTCCAAATAGGAACTA---TCCAATCCATGGGTATACCAAGA 48443 Query 67478 TGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAG 67537 || ||||| ||||| || |||| ||| || || | || | ||||||| ||||| || Sbjct 48444 AGTTACAAAAGTAGTYCCTGTAAACCAACCCCCTAAAGCAAAATAAGCACAAGGAAAGAG 48503 Query 67538 AAGTAGTCCAGACCAACCCACAAAGACAAA 67567 | ||| |||||||| | ||||| ||||| Sbjct 48504 CAATAGGCCAGACCATCATACAAAAACAAA 48533 Score = 159 bits (176), Expect = 4e-34 Identities = 220/304 (72%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 |||||| || | |||| || ||||| || || ||||||| || |||||||| || | Sbjct 709 ATTAAAAAGCGATTCCACATGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 768 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||| ||| ||| ||||| || ||||| | || ||||||| Sbjct 769 GATCCTGAGCTGCCATCCACGCATGAATACCCTCATTTAAAAGAATATATTTGGTGTAGA 828 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||||||||| | ||| | ||||| | ||| ||||| |||| Sbjct 829 AAGTCTCAAATTCAGGATCTTCTGCTGCACGGATTTTCTGGGA-AGAAA-TCATAGGCAC 886 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 ||||| ||||| || ||| | || || | | | || | | || || ||| | | Sbjct 887 ATAGGTTCAGAGCCAGGGCAACTA-GCCAATAGCAGTCATCTATAAACTGATTACAAGTA 945 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 ||| | |||||||||||| ||||| | |||||| ||| | || |||||| || || | Sbjct 946 CAAGTAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGAAACACCAAATATTTGGG 1005 Query 66886 ACCA 66889 |||| Sbjct 1006 ACCA 1009 >seq666 Length=229199 Score = 183 bits (202), Expect = 3e-41 Identities = 188/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 66689 AATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGA 66748 ||| || || | ||||| ||||| || || || ||||| ||||| ||| || ||||| Sbjct 152280 AATATTTTTGGCATAGAAAGTCTCAAATTCAGGATCTTCCGCTGCATGGATTTCCTGGGA 152339 Query 66749 TACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCA 66808 | |||||| ||||||| ||||| | ||| || |||| | || || | ||| |||| Sbjct 152340 AATGAAGTCACAAGCACGTAGGTTCAAAGCCAGGCCAACTACGCCAATAGCACTCATCCA 152399 Query 66809 AAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGC 66868 | ||| | || || ||||| |||||||||||||| ||||| | |||||| ||| || Sbjct 152400 TAAACCGGTGACGGGTACAAATAACATAAAGAAATGTAACCAGCCTTTATTGAGAAAAGC 152459 Query 66869 AATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTC 66928 || ||||||||| |||||||| ||||| | |||||||||||||| ||||||||||| | Sbjct 152460 AACACCAAAGATTTGAGACCAAAAGCGATAAGCAGTAACCATTGAATAAGTTTCTTCAGC 152519 Query 66929 TTGAGT 66934 |||||| Sbjct 152520 TTGAGT 152525 >seq12572 Length=34890 Score = 141 bits (156), Expect = 1e-28 Identities = 195/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 67047 CCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAAT 67106 |||||||||||||| ||||| || ||||| ||||| || | ||| || | |||| Sbjct 26693 CCCATCATATGAAATGGGTTTAATGTCCAATTATGAAAAAAAAAGAAGAAAAGGATGAAT 26752 Query 67107 CGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGG 67166 ||||| || |||| || || ||| | | | || ||||||| ||||| ||||| || Sbjct 26753 CGAAATATAGCTGCTACGCCAAAAAAAAAAACAAAGAACCAACCAGATTGTCCCAGTGGA 26812 Query 67167 TAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAG 67226 || || || || | | |||||||||||||| ||||||||||| | ||| ||||| | Sbjct 26813 TAAATAAGGAAAAAAAAAACAAAAACAGCGAACGGACCAGAGAATGAAATTGCATTAAAA 26872 Query 67227 GGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGC 67285 | | | || ||| || || |||||||| || || | ||| ||| |||||| || Sbjct 26873 AAAAACA-ATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATAAAAAAAATTAGTGC 26931 Query 67286 GAAAGCCCCGTGGAGCGCCACAAAATTCCA 67315 |||||||| ||||| || |||||| |||| Sbjct 26932 AAAAGCCCCATGGAGAGCGACAAAAGTCCA 26961 >seq12273 Length=37008 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 67974 GAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAAC 68033 ||||||||| |||||||||||||| || |||| ||| | |||||||||||||| || || Sbjct 29442 GAAACCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGAACCAGATCCCTAC 29501 Query 68034 GACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAAC 68068 |||||||| ||||| | ||||||||| | |||| Sbjct 29502 TACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAAC 29536 >seq11770 Length=261943 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 68574 TGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAAT---TGCATTTGAACTAGGAACAAC 68630 ||| ||||| ||||| || | ||| || | |||| |||| ||| ||| || || Sbjct 78581 TGCAGCTTCTCAAATTGGGTGAAAATGCAATTCAATCCCTGCA---GAAGTAGAAATAAT 78525 Query 68631 AGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACC 68690 |||| ||| || || ||||| | ||| || | ||||||| ||| ||||||||||| Sbjct 78524 AGCAATAGAGATAATATTGTTTCTATAAAGTAAAGAACCAGAGACAAACTCACGAATACC 78465 Query 68691 ATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 ||| || || || || ||||||||||||||||||| Sbjct 78464 ATCAATATCTACTGGAGGAGCAGCGATGAAGGCGA 78430 >seq8160 Length=957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68057 AGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATC 68116 |||| | ||||| ||||||||||| | ||| |||||||| | ||||| || || Sbjct 458 AGTGTAAAGAACGAGAGTTGTTGAAACTAGGATATTGGAAGATTAATCGACCAAAATAAT 399 Query 68117 CATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCT 68176 |||| ||||| ||||| || || ||||||||||||| | | || |||||||| | || Sbjct 398 CATGAGCAGCCACAATATTATAGGTCTCTTCTTCTTAATCAAATTTGTAACCCTCATTAG 339 Query 68177 GGGACTCAGTTTCAGTGGTT 68196 |||||| ||||| || || Sbjct 338 CAGACTCATTTTCATTGTTT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571929720743520