Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8403 134 4e-26 seq9858 122 3e-22 seq7477 111 5e-19 seq9779 107 6e-18 >seq8403 Length=198720 Score = 134 bits (148), Expect = 4e-26 Identities = 237/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||||||||| |||||| | ||| ||||| |||||| ||| | | | || Sbjct 82246 ATTTCTTACGGTACCATCATATTTCACCATGATGTCCTCCATAGCCTTCACAAGTCTCCG 82187 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| ||| || || ||||| ||||| || ||||| | | |||||| Sbjct 82186 CTGGATATACCCAGTTTCAGAAGTCTTCACAGCAGTATCTATAAGACCTTCTCTACCACC 82127 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | || |||| || || Sbjct 82126 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAATTCTCCACAAA 82067 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || | ||| || || || ||||||| || | | || | | Sbjct 82066 CCCACGGCTTTCAGGACCAAAGTCATCTTTAGTGAAATGTGGCAACGTTC-GATCAATGA 82008 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || ||||||| ||||| || ||||| ||||||||||| | || | | |||| ||| Sbjct 82007 -AACCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGC 81949 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| || | |||||| || ||||| ||| | |||||| Sbjct 81948 GAAATGTTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 81907 >seq9858 Length=59757 Score = 122 bits (134), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||||||||| |||||| | ||| ||||| |||||| || | | | || Sbjct 39054 ATTTCTTACGGTGCCATCATATTTCACCATGATGTCCTCCATAGCTTTCACAAGCCTGCG 38995 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || ||||| ||||| ||| || || || ||||||||||| ||||| | | ||||| Sbjct 38994 TTGGATATACCCAGTCTCAGAAGTCTTCACGGCTGTATCAATCAGACCTTCTCTGCCACC 38935 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || |||| || | ||| |||| || || Sbjct 38934 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCCCGAAGGTAAGAGTTCTCCACAAA 38875 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTC-AT 302776 ||||| || || || ||| || || || ||||||| || | | | | Sbjct 38874 TCCACGACTTTCAGGACCATAGTCATCTTTCGTGAAATGTGGCAATGTTC-GACCACTGA 38816 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || ||||||| ||||| || ||||| ||||||||||| | || | | ||| |||| Sbjct 38815 AACCAAATGGGATCCGCTTGCCTTCAACATTCTGCTGTCCAACACAAGCAGCCATTTGCG 38756 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||| || | |||||| || ||||| ||| | ||||| Sbjct 38755 AAATGTTAATGAAACTGCCTTTTGAGCCTGCAGTGGCCATA 38715 >seq7477 Length=85115 Score = 111 bits (122), Expect = 5e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||| ||||| ||||| |||||||| | ||||||||||| ||||||||| | ||| || Sbjct 75790 GCCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATAGGTACAATTCC 75731 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 |||||| || ||||| ||||| ||||| | |||| | |||| ||| |||| Sbjct 75730 ATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGA 75671 Query 156182 TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAAT 156241 | ||||| || || | |||| || ||| |||||||| | ||||| |||| Sbjct 75670 GACGCCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAAAT 75611 Query 156242 ACCTTCAATAGAATCATCTTCCAT 156265 || |||||| ||||||| ||| Sbjct 75610 TCCCTCAATACTGTCATCTTTCAT 75587 >seq9779 Length=60839 Score = 107 bits (118), Expect = 6e-18 Identities = 286/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| || || | || || || || |||||||||||||||||| Sbjct 14166 CTCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGAGTCTGTTCCCTTTCATCATTTCC 14225 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 ||| | ||| ||| | | | || || | ||||||||||||||||| |||| || Sbjct 14226 ACCACC--AAT-ACCTGTACCTCT---TTGCCTTCCAACAGCATCAATTTCATCAACAAA 14279 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | || | || ||| | || | || ||||| || Sbjct 14280 CACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGGGAAGCA 14337 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 |||| ||||||| |||| || ||||| ||||| | || | |||| | |||| ||| Sbjct 14338 CCAACACCAACAAACATCTCCACAAACTCAGAGCCAGAAA-TTGAGAAAAATGGCACACC 14396 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 || || || || | |||| | || || | || ||||| ||||||||||| || | | Sbjct 14397 AGCCTCTCCAGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTCCAGGTGGACCGACAAG 14456 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| || || || | || ||| ||| | | | ||||| |||| || || Sbjct 14457 AAGAACACCTTTAGGAATGCGAGCACCAACAGCAGTGAACCTTTCAGGCTTCTTCAAGAA 14516 Query 289293 TTCTACAATTTCC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAA 289350 || || | |||| | ||| || | ||||| ||||| ||| || || |||||| |||| Sbjct 14517 CTCGACCACTTCCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCGACATCATCAAAT 14574 Query 289351 GTAA 289354 |||| Sbjct 14575 GTAA 14578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471488797787932