Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq16913 289 3e-73 seq10113 259 5e-64 seq12982 187 3e-42 seq666 145 8e-30 seq12572 123 3e-23 seq8160 95.1 1e-14 >seq16913 Length=117496 Score = 289 bits (320), Expect = 3e-73 Identities = 532/775 (69%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 157699 ||||| | || | || | ||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 157700 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 157759 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 157760 ATCATCTCTGGTGCAGTTGTACCATC-----------TTCCAAC-------GCAATTGGT 157801 || || |||||||| || | || | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 157921 |||| | || | || | | || | ||||| | | || ||||| |||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 157922 TGGG-AACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCC 157980 |||| ||||| | |||| | |||| |||||| ||||| | | |||||||| ||||| Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 157981 AGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGA 158040 | || || || |||||| ||| | || || || | |||||||| ||||||||| Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 158041 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158100 || | ||||| | || || ||||||| ||| |||| || |||||||||| | ||| || Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 158101 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158160 ||||||||||||||| | || || ||| | ||| | ||||| |||||||| || || Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC--- 94627 Query 158161 TTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAA 158219 |||| | |||||| || | | || | || | | || | ||||| ||||||| Sbjct 94626 TTTCAGCGTTATGCATGGTTCCTTGGCAACCT-CTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 158220 CAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCG 158279 ||||| || | |||||||| || |||||||| |||||||| | ||| ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 158280 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 158334 | || || || || || ||||| || ||||| ||||| ||| | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 259 bits (286), Expect = 5e-64 Identities = 473/686 (69%), Gaps = 5/686 (1%) Strand=Plus/Minus Query 159330 TTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 159389 ||||||||||| | |||||||| ||| | || |||| ||||||| | || | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 159390 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 159449 |||||| |||| || || ||||||| || |||||| ||||| || | | ||||||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTCC 48414 Query 159450 TATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGG 159508 ||| | || || ||| || || | ||||| || || || |||||| | | | | Sbjct 48413 TATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGC 48355 Query 159509 TCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCA 159568 || ||| | | ||||| ||||| | || |||||| |||| || || || || Sbjct 48354 ACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCA 48295 Query 159569 ACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCAT 159628 | | || || | |||| |||||| || ||||| || || || ||||| |||||||| Sbjct 48294 ATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCAT 48235 Query 159629 GCTCCGTCAGTTTGAACTGGCAC-GTCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 159687 | | ||||| ||||||| || | |||| | | | || ||||| ||||| ||| | | Sbjct 48234 GTTACGTCAATTTGAACATGCTCAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCAT 48176 Query 159688 TCTCTGGTCCTATTGCTGTTTTT-GTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCC 159746 ||||| |||| | ||||||| || || ||||| | || ||| |||| || || Sbjct 48175 TCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCT 48116 Query 159747 AGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTT 159806 ||| ||| || | | | ||||| | | || || ||| |||| | | ||| | Sbjct 48115 GGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTC 48056 Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866 |||||||||| || ||||||||||| || || ||||||||||| ||||| || || || Sbjct 48055 CAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTA 47996 Query 159867 GGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 159926 || | ||| || || | | |||||||| | ||| |||| ||||| || | ||||| Sbjct 47995 GGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGAT 47936 Query 159927 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCT 159986 | || ||||||||||| | || | | | ||||||||| || || ||||| || Sbjct 47935 GATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCA 47876 Query 159987 ATGGTCACTGCAAACCGCTTCTGGTC 160012 ||| ||||| | ||| |||| ||||| Sbjct 47875 ATGATCACTACTAACAGCTTTTGGTC 47850 Score = 145 bits (160), Expect = 8e-30 Identities = 216/304 (71%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 160008 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTG 160067 ||||| || || || ||| || | ||||| || || || ||| | |||||||| ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 160068 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAAT 160127 |||| | ||| || || | | || | |||||||| | ||| ||| ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 160128 CTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 160187 || |||| || |||||| | || | ||| | |||||||||||||| ||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 160188 ACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCT 160247 || |||||||||||| | || || || || || || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 160248 GATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTT 160307 ||||| || |||||||| |||| ||||| || || || | || | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 160308 TAAT 160311 |||| Sbjct 712 TAAT 709 >seq12982 Length=32303 Score = 187 bits (206), Expect = 3e-42 Identities = 338/492 (69%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | || ||| | ||||| | | || |||| ||||| ||||||||| | || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | | |||||||||| ||||| ||| |||||||| ||||| || || | || |||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 | | ||| | | || ||| | ||||||| ||| || |||| ||||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 158059 CTCTGGTACTTT 158070 ||||||||||| Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 145 bits (160), Expect = 8e-30 Identities = 182/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 159962 AACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 160021 |||||||| || || ||||| || ||||| ||||| | ||||| ||||| || ||||| Sbjct 152526 AACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTT 152467 Query 160022 CGGTATTGCGTTTTCT-AACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTA 160080 ||| |||| |||||| || || | ||| | |||||||| ||||| ||||| || || | Sbjct 152466 TGGTGTTGC-TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCA 152408 Query 160081 TGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACG 160140 ||| | |||| |||||||| | ||||||| ||| | || || ||||||| | Sbjct 152407 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTG 152348 Query 160141 ATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCA 160200 | ||| | || || ||| ||||| |||||||| ||||||||||| ||||| ||| Sbjct 152347 ACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCA 152288 Query 160201 AAAACAT 160207 |||| || Sbjct 152287 AAAATAT 152281 >seq12572 Length=34890 Score = 123 bits (136), Expect = 3e-23 Identities = 351/534 (66%), Gaps = 14/534 (3%) Strand=Plus/Minus Query 159324 GATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCC 159383 || || || |||||| | ||||| || ||| | || |||| ||||||| | || Sbjct 27219 GACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 27160 Query 159384 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 159443 || |||| |||| || || ||||||| || |||||| || | | ||| Sbjct 27159 TTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGGCT 27100 Query 159444 AGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCT 159503 ||||||||| | || ||| || || | || | | | || || ||||| | | Sbjct 27099 AGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGTTTTTTTTTCCACTCCTGCCAATAGT 27040 Query 159504 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGG 159563 | | || ||| | | ||| ||| || || | |||||| |||| || ||| Sbjct 27039 TTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGTTGG 26980 Query 159564 TGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGT 159623 || ||| || || |||| |||||| || ||||| || || || || |||||| | Sbjct 26979 TGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTT 26920 Query 159624 TTCATGCTCCGTCAGTTTGAACTGGCACG-TCT---CATTGGTATCCGTCCTTACAATGC 159679 || ||| | ||||| |||||||| || || ||| || | || | | ||| |||| Sbjct 26919 TTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGTTTTTTT--TTA--ATGC 26864 Query 159680 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGG 159739 ||| | ||||||||||| | ||||||||||| | ||||| || || ||| |||| Sbjct 26863 AATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGG 26804 Query 159740 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGAT---TCCT 159796 || || ||||||| || | | | ||||| || ||||| || ||| ||| |||| Sbjct 26803 ACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 26744 Query 159797 GTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGG 159850 || ||| || ||||| || ||||| ||||| || || ||||||||||| Sbjct 26743 TTTCTTCTTT---TTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 158207 GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACC 158266 ||||| | ||||| ||||| || | |||||||| || | | |||| ||||||||| Sbjct 318 GAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACC 376 Query 158267 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158326 ||||| || || || || |||| || || ||||| || ||||||||||| || ||| Sbjct 377 TATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTC 436 Query 158327 AACAACTCCCGTTCCTTGCACT 158348 |||||||| ||||| || |||| Sbjct 437 AACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548254881799520