Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq16913 315 8e-81 seq10113 266 4e-66 seq12982 215 6e-51 seq666 174 2e-38 seq12572 161 1e-34 seq12503 100 3e-16 seq8160 87.8 2e-12 seq12273 86.0 7e-12 >seq16913 Length=117496 Score = 315 bits (348), Expect = 8e-81 Identities = 523/751 (70%), Gaps = 32/751 (4%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| | || | || | ||||| Sbjct 95194 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGTACCTTATTAACCGCAAC- 95136 Query 150926 ATTTGC---TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGT 150982 || | || || | || |||||||||||||| || || || || ||||| || ||| Sbjct 95135 --TTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGT 95078 Query 150983 GAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCT 151042 || || ||| || ||||| | | || | ||||| || || ||||||||| || ||||| Sbjct 95077 GAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCT 95018 Query 151043 TC------------------TTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAA 151084 | |||| || ||||| |||| || || || || ||| || Sbjct 95017 GCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAA 94958 Query 151085 GCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCAC 151144 | || ||| | ||||||||| | || || ||||||||| | || |||| | | Sbjct 94957 ACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATAT 94898 Query 151145 TTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGG-AACTGTCTTACCGCTTGGG 151203 || | ||||| | | ||| |||||||||||||||| |||| || ||| |||| Sbjct 94897 TTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGG 94838 Query 151204 TATGCGTCCCTGGATCTGCG-TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGT 151262 || ||| || ||||| ||| ||||||| || ||||| |||| ||||| ||||| || | Sbjct 94837 TACGCGCCCTTGGAT-TGCTATTGCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTT 94780 Query 151263 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTG 151322 || | || || || | |||||||| |||||| |||| |||| | || || |||| Sbjct 94779 TCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTG 94720 Query 151323 GCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCC 151382 | | ||||||| || |||| ||||| | |||||||||||| || ||||| | || | Sbjct 94719 GTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTC 94661 Query 151383 ATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTC 151442 | ||| | ||| | |||||||| ||||| || || || | | ||||| ||||| Sbjct 94660 ACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCTTTCAGC---GTTATGCATGGTTCCT 94604 Query 151443 TGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACA 151502 ||| || ||| || | | || ||||| ||||| ||||| || | ||||||| Sbjct 94603 TGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACA 94544 Query 151503 AGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTC 151562 | || ||||||||||||||||| | || ||||| || || |||||||| |||||||| Sbjct 94543 AATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGAT 94484 Query 151563 TCATCTTCCAATACGCTTCCTTCAACAATTC 151593 | ||||| ||||| ||| | |||||||| || Sbjct 94483 TAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 266 bits (294), Expect = 4e-66 Identities = 503/728 (69%), Gaps = 17/728 (2%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||| | ||| || | |||| ||| |||||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTG-TTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGG 48511 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| ||||| | || |||||| |||| || |||||||| Sbjct 48510 CCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTT 48451 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 152536 | || ||||||||| || || |||| ||||||||| |||| || |||| |||| Sbjct 48450 TGTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTC 48393 Query 152537 TTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | ||||| ||| ||||| || || | | | || ||| | | || || ||| Sbjct 48392 TTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGG 48333 Query 152596 GGTCCTGAGGCTCAAGGGGATTT----CGTCAGATGGATTCAGCTCGGAGGACTCTGGGC 152651 || | || | || |||||||| ||| |||| ||| | || || || ||| | Sbjct 48332 GGCCTGGAAGAACAGGGGGATTTTACTCGTT-GATG---TCAATTAGGTGGTCTGTGGAC 48277 Query 152652 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACT 152711 |||||| || ||||| |||||||| ||||| ||||||||| | || || ||||||| Sbjct 48276 TTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACA 48217 Query 152712 GGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 152770 || | |||| || | | || || || ||||| ||| | |||||| |||| | | || Sbjct 48216 TGCTCAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTG 48158 Query 152771 TTTTT-GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCA 152829 ||||| ||| || || || | || || |||| ||||| ||| ||| || | | Sbjct 48157 TTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTG 48098 Query 152830 TCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGG 152889 ||| || | | || || || | |||| | || ||| | |||||||| | || ||| Sbjct 48097 AGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGG 48038 Query 152890 ACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCT 152949 || || || || |||||||||||||| ||||| || | || || | || |||| | Sbjct 48037 ACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGC 47978 Query 152950 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACT 153009 | || ||||| | ||| |||| || ||| | | |||||| ||| ||||| || Sbjct 47977 TCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACC 47918 Query 153010 TTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGT 153069 ||| | |||| || ||||||| ||||| || ||||| ||| | ||| ||||| | Sbjct 47917 TTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGC 47858 Query 153070 TTCTGGTC 153077 || ||||| Sbjct 47857 TTTTGGTC 47850 Score = 174 bits (192), Expect = 2e-38 Identities = 218/297 (73%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 153073 TGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTG 153132 |||||||| |||||||| || ||||| ||||||||| ||| | |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 153133 TTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAAT 153192 |||||| ||| || || | | || || ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 153193 CTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAG 153252 || |||| || ||||| | | || ||||| | || |||||||||||||||||||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 153253 ACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTT 153312 || ||||| || || |||| ||||| || || ||| ||| ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 153313 GACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCT 153369 || || |||||||| || | | |||||||| ||||| | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq12982 Length=32303 Score = 215 bits (238), Expect = 6e-51 Identities = 329/466 (71%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 150867 ACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCA 150926 ||||||| || |||| ||||| ||||| ||||||| || || | ||| | ||||| Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAAC-- 558 Query 150927 TT---TGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTG 150983 || | ||| || | | |||||||||||||| || || || || ||||| || |||| Sbjct 559 TTCCGTACTT-ATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTG 617 Query 150984 AACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTT 151043 | || ||| |||||||| | || || || |||| || |||||||||||| || ||||| Sbjct 618 AGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTA 677 Query 151044 CTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAAT 151103 ||| | | ||||| |||| || || || || ||| |||| || || | ||||||| Sbjct 678 CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 151104 GGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATG 151163 || | ||||| || ||||||| | || |||| | || ||| | ||||| | | Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTT 797 Query 151164 CTTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCG 151223 ||| |||| |||||| |||||||| || || |||||||||| | ||||| | Sbjct 798 GTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTG 857 Query 151224 TTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTC 151283 ||||||| || ||||| ||||| | ||| | ||| | ||| | | || ||| | |||| Sbjct 858 TTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTC 917 Query 151284 AAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATT 151329 ||| ||| ||||||| ||||| | || || ||||| || || Sbjct 918 AAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq666 Length=229199 Score = 174 bits (192), Expect = 2e-38 Identities = 195/260 (75%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 ||||||| ||||| || ||||| |||||||||||| | || || ||||| || || ||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATG 153147 || |||||||| ||||||| ||||| | |||||||||||| | |||||||| || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 153148 GGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGAT 153207 ||| | |||| | ||||||| | |||| || ||| | || || ||||||| || Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 153208 TTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAG 153267 || | || || |||||| || | |||||||||||||||||||| |||||| | || Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 153268 AATATCCTTTTGAACGAAGG 153287 ||||| |||| || |||| Sbjct 152285 AATAT--TTTTTAAACAAGG 152268 >seq12572 Length=34890 Score = 161 bits (178), Expect = 1e-34 Identities = 362/536 (68%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 152386 AGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 152445 || ||||||||||||||| || |||||| || || | || ||||| ||||||| | Sbjct 27222 AGGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTC 27163 Query 152446 GCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTG 152505 ||| || |||| |||| ||||||||||| | || |||||||||| ||| Sbjct 27162 GCTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTG 27103 Query 152506 GCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAG 152563 || ||||||||| |||| || |||| ||||||| | | |||| ||||| || Sbjct 27102 GCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCCA 27045 Query 152564 ATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCA 152623 || | | | || ||| | | || | | || || || || |||||||| Sbjct 27044 ATAGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTC 26985 Query 152624 GATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAA 152683 | ||| ||| | | ||| ||||||| || ||||| |||||||| || |||| Sbjct 26984 GTTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAA 26925 Query 152684 TCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAAT 152742 | ||| ||| | || || |||||||| || || ||| || | | | | ||| Sbjct 26924 TTTTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAAT 26866 Query 152743 GCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTG 152802 || ||| | ||||||||||| |||||||||||||| | || || || || || ||| Sbjct 26865 GCAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTG 26806 Query 152803 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTC--- 152859 || ||||| ||||||| || | | | ||| || || ||||| || || |||||| Sbjct 26805 GGACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATC 26746 Query 152860 CTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGG 152915 ||| ||||| || || || || |||||||| || || |||||||||||||| Sbjct 26745 CTTTTCTTCTTTTTT---TTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq12503 Length=143431 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||| | || | ||| || Sbjct 88079 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGG 88137 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| ||| ||||||||||| Sbjct 88138 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTT 88197 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTA 152516 || ||||||||| || || ||||| |||||||| Sbjct 88198 TATAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTA 88236 >seq8160 Length=957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 151475 GAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATC 151534 ||||| ||||| || | |||||||| || | | |||||||||||||||| || || Sbjct 326 GAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATT 385 Query 151535 GTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCC 151594 || || || || | ||| |||||||| | ||||||||||| || |||||||| || Sbjct 386 GTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCT 445 Query 151595 CGTTCGCTGCACT 151607 ||||| | |||| Sbjct 446 CGTTCTTTACACT 458 >seq12273 Length=37008 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 151596 GTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTG 151655 |||| | ||||||||| | || || |||||||| || || |||||||||||||| | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 151656 GTGTCAGCACCATGGCATTCAACCTGAACGGTTTC 151690 || | || || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549502609797920