Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq12418 86.0 5e-12 seq11736 86.0 5e-12 >seq12418 Length=36051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || ||||| | || || || || || ||||| || | || | ||| ||| | Sbjct 33548 ATGCAGATCTTTGTGACGACCTTGACTGGAAAGACCATCACACTGGAGATTGAGTCCTCA 33489 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 | || || | | || || ||||||| ||||| || ||| | || |||| || Sbjct 33488 C---ACAATCAACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACTGGACCA 33432 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || || | ||| || || ||||| ||||||| | | || |||| |||||||| Sbjct 33431 ACAGCGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGATTACAA 33372 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 |||||| ||||| || || | ||| | ||| | ||||| |||||| Sbjct 33371 CATTCAGAAAGAGTCCACCCTTCACCTTGTGCTCAGACT--GAGGGG 33327 >seq11736 Length=148999 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | || || || ||||| || |||| ||| | Sbjct 10004 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAGACCATCACTCTCGAGGTTGAGAGCTCC 10063 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 10064 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 10123 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||||||||||| | ||| |||| || |||||| Sbjct 10124 CAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGATGGGCGCACATTGGCTGACTACAAC 10183 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || |||||||| Sbjct 10184 ATTCAGAAGGAATCTAC 10200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412753870643948