Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11736 93.3 3e-14 seq12070 91.5 1e-13 >seq11736 Length=148999 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| ||| | ||||| || ||||| || |||| ||| ||| Sbjct 10004 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAGACCATCACTCTCGAGGTTGAGAGCTC- 10062 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || || ||| | ||| ||| || Sbjct 10063 CGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 10122 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||||||||| | ||| |||| |||||||| Sbjct 10123 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGATGGGCGCACATTGGCTGACTACAA 10182 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||| ||||| Sbjct 10183 CATTCAGAAGGAATCTAC 10200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | || ||||| ||||| || |||| ||| ||| Sbjct 9776 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 9835 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || ||| ||||| || || || ||| | ||| ||| || Sbjct 9836 -GACACTATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 9894 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || || || ||||||| | || |||| |||||||| Sbjct 9895 GCAGAGGCTCATCTTTGCTGGCAAGCAACTAGAGGACGGCCGCACCCTGGCTGACTACAA 9954 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||||||||| Sbjct 9955 CATTCAGAAGGAGTCTAC 9972 >seq12070 Length=146516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || ||| | || ||||| ||||| || | || |||| | Sbjct 65218 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATCACTTTGGAGGTGGAGTCATCT 65159 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 65158 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 65099 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 65098 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 65039 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 65038 ATCCAGAAGGAGTCTACTCTCCACCTGGTG 65009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398792038181404