Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq12936 127 2e-24 seq12418 123 2e-23 seq11548 116 3e-21 seq12004 111 1e-19 seq9352 109 4e-19 >seq12936 Length=140512 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || ||||||||||| ||||| |||| || || || ||||| || |||||| Sbjct 38900 GTGGACTCCTTTTGAATGTTGTAATCTGCAAGCGTACGCCCGTCCTCGAGCTGCTTGCCA 38959 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || | | |||||| || || ||||| || || ||||| || ||| |||| || Sbjct 38960 GCGAAGATAAGGCGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTG-AATCTTTGCCTT 39018 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 |||| | || | ||||||||| || || ||||| || ||||| |||||||| | ||| Sbjct 39019 GACATTGTCAATCGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTGAGGGT 39078 Query 29769 TTTAACAAATATCTGCATTTTAAA 29792 || ||||| |||||||| | ||| Sbjct 39079 CTTCACAAAGATCTGCATCTGAAA 39102 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||| || || || |||| || || ||||| || || |||| |||||| ||| Sbjct 38657 AGCACCAGGTGCAGGGTTGATTACTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 38716 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || || | ||| | || | | ||||| ||||| ||||||||||| ||||| Sbjct 38717 TCGAGCTGCTTCCTGGCAAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCGTTGTCC 38776 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| || ||| | | | |||||||| || || || | || || || Sbjct 38777 TGGATCTTTGCCTTCACATTGTTGATGGTGTCAGAGGACTCCACCTCCAAGGTGATGGTC 38836 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || | ||| || ||||| |||||||| Sbjct 38837 TTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 38868 >seq12418 Length=36051 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || || || | || || ||||| || || |||||||| || || || Sbjct 33550 CCTCCCCTAAGGCGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC 33609 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || |||||||| | ||||| | ||||| ||||| || Sbjct 33610 AAGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCCGGAGGG 33669 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| | ||| || | || ||| | || | ||||||||| || || Sbjct 33670 ATACCTTCCTTGTCCTA-AATCTTCGCCTTTACATTATCGATAGTGTCAGAGGACTCGAC 33728 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 ||||||||| ||||| |||||||| | ||| || || || ||||||| Sbjct 33729 TTCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCA 33775 >seq11548 Length=265335 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| || ||||||| || || ||| || || || ||||| || || ||| Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 39511 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||| ||||||||| | |||| | ||||| ||||| ||| Sbjct 39510 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGA 39451 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | |||||||| || || Sbjct 39450 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCAACC 39391 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||||||||| | ||| || || || |||||||| Sbjct 39390 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 39344 >seq12004 Length=146743 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || ||||| || || || |||||||||||||| | |||||| Sbjct 145614 ACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGACC 145555 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | || | | ||||| |||||||| || ||||| || Sbjct 145554 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 145495 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | || ||||| || || || || || || Sbjct 145494 GTCTTGGATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTGAT 145435 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || ||||| |||||||| Sbjct 145434 GGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 >seq9352 Length=67289 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || || |||||||| || || ||||| || || || Sbjct 47379 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCG 47438 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||||||| | || | || ||||| || || ||| Sbjct 47439 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 47498 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || |||||| | || | ||||| || || || Sbjct 47499 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGACTCGACC 47558 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 || || || || || ||||| || | ||| ||||| || |||||||| | |||| Sbjct 47559 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATCTGCAAAC 47613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385137340438476