Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq16913 327 1e-84 seq10113 251 8e-62 seq12982 205 1e-47 seq666 140 4e-28 seq12572 120 3e-22 >seq16913 Length=117496 Score = 327 bits (362), Expect = 1e-84 Identities = 539/773 (70%), Gaps = 26/773 (3%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| |||| | |||||| | || | || ||||||||||| | Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| | || || | | |||||| | || ||| | || ||| | || || ||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| || |||||||| || || ||| || ||||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTC-----------TTCAAAC-------GCAATCGGT 157272 || || |||||||| || ||||| | ||| || |||||||| Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 157273 CTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGT 157332 | || || ||||| || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 157333 CCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAG 157392 |||| | || | || | | || | | || | | |||||||| |||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 157393 TGGG-AACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACC 157451 |||| ||||| || |||| | |||| |||||| ||||| | |||| || || || || Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 157452 AGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGA 157511 | || ||||| ||||| || ||| | || || || | |||||||| ||||||||| Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 157512 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCA 157571 || | ||||| | || || ||||||| ||| |||| ||| | || ||||||| |||||| Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 157572 CAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTT 157631 ||| || ||||||||| | || |||||| | || | ||||| |||||||| || ||||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCTTT 94624 Query 157632 GTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAA 157690 | | |||||| || | | || || | | ||| || | ||||| ||||||| Sbjct 94623 CAGC---GTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAACCACTGAAA 94568 Query 157691 CAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTG 157750 ||||| || | |||||||| || ||||||||||||||||| | || ||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 157751 CTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAAC 157803 |||| |||||||| || ||||| | ||||| ||||| ||| | ||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAAC 94455 >seq10113 Length=56568 Score = 251 bits (278), Expect = 8e-62 Identities = 494/723 (68%), Gaps = 7/723 (1%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||| | | | |||| | ||| |||||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| ||||| | || |||||| |||| || || ||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || |||||||| |||||| | | || ||||||| | || || ||||| ||||| Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCT 48392 Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 || |||| || ||| ||||| ||| || | | | || ||| | | || || |||| Sbjct 48391 TAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGG 48332 Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072 | | || | || |||||||| | || ||| | || || || |||| ||||| Sbjct 48331 GCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTG 48272 Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 159132 | || ||||| || || ||| ||||| ||||||||| | || || ||||||| || | Sbjct 48271 TCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTC 48212 Query 159133 -GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159191 |||| || | | || || || ||||| ||| | |||||| |||| | ||||||| Sbjct 48211 AGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTT 48153 Query 159192 -GTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTT 159250 || || |||||| | || ||| | || || || ||| ||| || | | | || Sbjct 48152 TGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTT 48093 Query 159251 TGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACT 159310 ||| | | | ||||| ||| | || ||| | ||||| || | |||||||| | Sbjct 48092 TGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTT 48033 Query 159311 AAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTAT 159370 |||||| || ||||||||||| ||||| || | |||| | ||| || |||| |||| Sbjct 48032 AAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTAT 47973 Query 159371 TCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAA 159430 ||||||| || | ||||| || ||| | | |||| || ||||| ||||| | Sbjct 47972 CCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTA 47913 Query 159431 GGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 159490 || | | | ||||||||| || || |||||||| ||| ||||| | ||| |||| || Sbjct 47912 TGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTG 47853 Query 159491 GTC 159493 ||| Sbjct 47852 GTC 47850 Score = 150 bits (166), Expect = 2e-31 Identities = 214/299 (72%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 159489 TGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTG 159548 ||||| || || || || || | ||||| || || || ||| | |||||||||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 159549 TTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAAT 159608 |||| | ||| || || ||| || | ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 159609 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAA 159668 || |||| || |||||| | || | ||| | |||||||||||||| |||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 159669 ACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 159728 || ||||||||||| | |||||| | ||||| || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 159729 GATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGCATT 159787 ||||| || |||||||| | || ||||| || || ||||||||| | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTT 714 >seq12982 Length=32303 Score = 205 bits (226), Expect = 1e-47 Identities = 342/492 (70%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | | | ||||| |||| | ||||| | || | || ||||| ||||| | Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATC-TGCTTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| | | ||| ||| | | ||| | || || || Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCATCGCTGCTCC 591 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| || || ||| |||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || ||||||||||| || ||||| ||| | ||||| | || || ||||| || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 ||| |||| ||||| ||||||| ||| | ||||| || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | || ||| | | || | | ||||||| ||||| ||||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | |||||||||| ||||| |||||| || || || || || || | ||| | ||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 | ||| | | || ||| | ||||||| ||| || |||| ||||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 157530 CTCTGGTACTTT 157541 ||||||||||| Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 140 bits (154), Expect = 4e-28 Identities = 183/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 159443 AACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 159502 |||||||| || || |||||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 152526 AACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTT 152467 Query 159503 CGGCATTGCGTTTTCT-AACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTA 159561 || |||| |||||| || || | ||| | |||||||||||||| ||||| || || | Sbjct 152466 TGGTGTTGC-TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCA 152408 Query 159562 TGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACG 159621 ||| |||||| ||||||| | |||| || ||| | || || ||||||| | Sbjct 152407 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTG 152348 Query 159622 ATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCA 159681 | ||| | || || ||| ||||| |||||||| |||||||| || ||||| ||| Sbjct 152347 ACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCA 152288 Query 159682 AGAACATTCTT 159692 | || ||| || Sbjct 152287 AAAATATTTTT 152277 >seq12572 Length=34890 Score = 120 bits (132), Expect = 3e-22 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 159063 TGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTT 159122 |||| |||||| || ||||| || || ||||| |||||| ||| ||| | || || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 159123 GAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTAT 159181 ||||| || || ||| || | | | | ||||| ||| | ||||||||||| | Sbjct 26901 GAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTT 26843 Query 159182 TGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGC 159241 ||||||||||| | |||||||| || ||||| || || || ||||||| || | Sbjct 26842 CGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGT 26783 Query 159242 TCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAA 159301 | | ||||| || || || ||||| | ||| | || ||| | || || || Sbjct 26782 TTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAA 26723 Query 159302 TTGGACACTAAACCCCTTCCATATGATGGG 159331 ||||||| ||||||| || ||||||||||| Sbjct 26722 TTGGACATTAAACCCATTTCATATGATGGG 26693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545154757618880