Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq16913 295 8e-75 seq12982 185 1e-41 seq10113 149 8e-31 seq12572 141 1e-28 seq666 134 2e-26 seq8160 87.8 2e-12 >seq16913 Length=117496 Score = 295 bits (326), Expect = 8e-75 Identities = 531/774 (69%), Gaps = 24/774 (3%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677 ||||| | || | || | |||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 177737 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 177738 ATCATCTCTGGTGCAGTTGTACCATC-----------TTCCAAC-------GCAATTGGT 177779 || || |||||||| || | || | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 177780 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 177839 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 177840 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAG 177899 |||| | || | || | | || | | || | | |||||||| |||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 177900 TGGG-AACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACC 177958 |||| ||||| | |||||| |||| |||||| ||||| | ||||||| || || || Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 177959 TGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGA 178018 | ||||||| || || || || | || || || | |||||||| |||||||| Sbjct 94801 T-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 178019 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 178078 || | ||||| | || || ||||||| ||| |||| || |||||||||| | ||| || Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 178079 CAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 178138 ||| ||||||||||| | || |||||| | ||| | ||||| |||||||| || ||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT-- 94626 Query 178139 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAAC 178198 ||| | ||||||||| | | || ||| | || | || || || |||| Sbjct 94625 -TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 178199 TGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGC 178258 |||||| || | |||||||| || || ||||||||||| |||| ||| ||||| || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 178259 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTC 178312 || || ||||| || ||||| || ||||| |||||||| | ||||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 185 bits (204), Expect = 1e-41 Identities = 340/493 (69%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| | | ||| || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCATCGCTGCTCC 591 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | || ||| | | || | | ||||||| ||||| ||||||||| | || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||||| ||||| ||||||||| || || |||||||||| || | || Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 | ||||| | | || ||| | ||||||| || || |||| ||||||| | || | Sbjct 892 TAT-TTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAA 950 Query 178036 TCTCTGGTACTTT 178048 | ||||||||||| Sbjct 951 TATCTGGTACTTT 963 >seq10113 Length=56568 Score = 149 bits (164), Expect = 8e-31 Identities = 212/296 (72%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 179653 TGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTG 179712 ||||| || || || || ||| | ||| |||||| |||||||| || ||||||| ||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 179713 TTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAAT 179772 |||| | ||| || || | | | | || |||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 179773 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 179832 || |||| |||||||| | || | ||| | ||||||||||||||||| || ||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 179833 ACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCT 179892 || ||||| || || | |||||| | ||||| || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 179893 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGC 179948 ||||| || |||||||| | || ||||| || || || ||||| |||| | ||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGC 717 >seq12572 Length=34890 Score = 141 bits (156), Expect = 1e-28 Identities = 353/531 (66%), Gaps = 4/531 (1%) Strand=Plus/Minus Query 178967 GGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTG 179026 |||| || || || ||| | |||||| || || | || |||| ||||||| | | Sbjct 27221 GGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 27162 Query 179027 CCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCATGGTCTTG 179086 | || |||| |||| ||||| ||||||| || |||||| || | | | | Sbjct 27161 CTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGG 27102 Query 179087 CTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGAT 179145 ||||||||||| | |||||| || ||||||| | | | | || || ||||| || Sbjct 27101 CTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAAT 27043 Query 179146 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGG 179205 | | | || ||| | | ||| ||| || || | |||||| |||| || Sbjct 27042 AGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGT 26983 Query 179206 TGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATT 179265 ||||| ||| || | |||| ||| || |||||||| || || || || |||||| Sbjct 26982 TGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATT 26923 Query 179266 GGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGC 179324 || ||| | ||||| |||||||| || || ||| || | | | || ||||| Sbjct 26922 TTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATGC 26864 Query 179325 GATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGG 179384 ||| | || ||||||| | || || || ||| | | || || || || ||||| || Sbjct 26863 AATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGG 26804 Query 179385 ACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACT 179444 |||||| |||||||||||| | ||||| || || || || ||| ||||| | || Sbjct 26803 ACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 26744 Query 179445 TTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGG 179495 |||||| ||| || || |||||| | ||||| ||||| |||||||| Sbjct 26743 TTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq666 Length=229199 Score = 134 bits (148), Expect = 2e-26 Identities = 179/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 179608 ACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTC 179667 || |||| || || || ||||| |||||||| || | || |||||||| || ||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 179668 GGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATG 179727 || ||| | ||| |||||| | ||||| || ||||||| | | ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 179728 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGAT 179787 ||| | ||| | | |||||||| | |||| || ||| | || || ||||||| ||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 179788 TTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAG 179847 || | || || ||| ||||| ||||||||||| || ||||| |||||| | || Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 179848 AACATTCTT 179856 || ||| || Sbjct 152285 AATATTTTT 152277 >seq8160 Length=957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 178194 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATC 178253 |||| |||||| || | |||||||| || | |||||||||| || ||||| || Sbjct 326 GAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATT 385 Query 178254 GTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCC 178313 || || || |||| ||| || ||||| || |||||||||||| | ||||||||||| Sbjct 386 GTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCT 445 Query 178314 CGTTCACTGCACT 178326 ||||| | |||| Sbjct 446 CGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605535194833760