Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1299 246 2e-59 seq11181 105 5e-17 seq14304 96.9 3e-14 seq12074 96.9 3e-14 seq11297 96.9 3e-14 seq4406 96.9 3e-14 seq9702 91.5 1e-12 >seq1299 Length=109948 Score = 246 bits (272), Expect = 2e-59 Identities = 699/1061 (66%), Gaps = 20/1061 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || ||||||||||||||||| | ||||| || || |||||||| Sbjct 45367 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCAAAGCATACAGTGATCTGAGGGACA 45426 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || ||||||| ||||| || | | |||| | || || ||| || || | Sbjct 45427 CCCCTAGGAGCAGGGGGGATTCCAGAGAGCTCAAATTTCCCAAGGAGATTGTTGTCCCTG 45486 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||| ||| ||||| || ||| || ||||| || || Sbjct 45487 GTCCGGGTCCTCTCGCCCTCATAAACCTGGATCAACACACCAGGCTGGTTATCAGAGTAG 45546 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || || ||| || || ||||| || ||||| || ||||| || Sbjct 45547 GTGGAGAAGAC-CTGCTCCTTCTTGGTTGGAATGGTGGTGTTCCTTGGAATAAGGACAGT 45605 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || ||||| ||||| | ||||||||| || || || ||||||| |||| || Sbjct 45606 CATGACTCCTCCAGCAGTTTCAAGACCAAGAGACAGTGGGGTCACATCAAGGAGGAGAAG 45665 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | || |||| | |||| ||| ||||| || || | ||||| ||||| Sbjct 45666 GTCCTGCACCTTCTCATTGCCCTCACCACTAAGGATAGCAGCCTGGACCGCAGCGCCATA 45725 Query 281785 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 |||||||||||||||||||| | | || || |||| || |||||||| || | Sbjct 45726 GGCAACAGCTTCATCAGGATTGATGCTCTTGCAA--AGTTCCTTTCCATTGAAGAAGTCC 45783 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || ||||| || || || || | || || || ||||| | |||| ||||| Sbjct 45784 TGCAGCAGTTGCTGAACTTTGGGGATTCTAGTAGAACCACCAACAAGGACAACATCATGG 45843 Query 281903 ACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACCAG 281960 || ||| | ||||||| || | |||| | |||| | || || | || | | Sbjct 45844 ACA-GTGCTCTTATCCATCTTGGCATCCCGCAGGCACTTCTCCACAGGCTCCATGCACTT 45902 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 282020 | || || | ||| |||||| || ||| | ||||| || | ||| || ||| Sbjct 45903 C-CTGAATAGGTCCATGTTAAGTTCCTCAAATCTGGCTCTGGTGATGGTGGAATAGAAAT 45961 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 |||| || || | | |||||||| ||||||||||||||| | | ||||| |||| | Sbjct 45962 CAATGCCCTCATAGAGAGAATCAATTTCAATCGTAGTTTGCGCTGTGGAAGAAAGTGTCC 46021 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 ||||| | ||||||| ||||| || |||| || || | | | || | | | Sbjct 46022 TCTTAGCCCTCTCACATGAAGTCCTAAGCCTTCTCAAAGCCCTGG--GGTTCCCAGTGAT 46079 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 282198 ||| |||| | ||| | ||| || |||| ||| | |||| | || || || || Sbjct 46080 ATCCTTTTTGTTTTTCCGCTTAAACTCTTGCACAAAGTGGTTTACCAAGCGGTTGTCGAA 46139 Query 282199 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 282258 || || || || | | ||||| || | || || | || | || | || || || Sbjct 46140 GTCCTCCCCACCAAGGTGAGTATCACCAGCTGTGGCCTTCACCTCAAATATACCCTCCTC 46199 Query 282259 AAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 282318 | || | |||| |||||| || |||||||| | ||||||||||| |||||| | Sbjct 46200 GATAGTGAGGAGAGAGACATCAAAAGTGCCACCACCAAGGTCAAAAATAAGGACATTCTT 46259 Query 282319 TTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 ||| | | | ||| || ||||||||||| |||| |||||||||||||| || Sbjct 46260 TTCACCAACACTAGTAGCTTTCTTGTCAAGACCATAGGCAATTGCAGCAGCAGTTGGCTC 46319 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| ||||| | || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 46320 ATTGATAATACGCATGACATTGAGACCAGCAATAACACCAGCATCCTTAGTTGCCTGCCT 46379 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || ||||| || || || |||||||| || | || |||| Sbjct 46380 CTGGGAATCATTGAAGTAAGCAGGAACGGTGACCACAGCAT 46420 >seq11181 Length=155859 Score = 105 bits (116), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 ||||| ||| |||||||| | ||||| || || |||||| | || | |||| Sbjct 141931 ACATCGAAGGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCGCCAACACTGGTC 141990 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 |||| || |||||||| |||| |||||||||||| || ||||| || || | || | Sbjct 141991 GCCTTTTTGTCCAGACCATAGGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGCAGA 142050 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || || || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 142051 ACGTTGAGGCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 142110 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || || ||||| || | ||| || Sbjct 142111 TAGGCCGGAACTGTGACAACAGC 142133 >seq14304 Length=24801 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCA----GCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || || ||||||||||| |||| |||| |||||||| || ||||| || || | | Sbjct 6599 TTCTTGTCAAGACCATAAGCAATAGCATGCAGCAGCAGTCGGCTCATTGATGATACGCGT 6658 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 |||||| ||||||||||| || ||||| || ||||| || || || || || || || Sbjct 6659 AACATTGAGACCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAA 6718 Query 282448 ATATGCAGGAACAGTAATAACGGCAT 282473 | ||||| ||||| ||||| |||| Sbjct 6719 GTTGGCAGGGACAGTGATAACAGCAT 6744 >seq12074 Length=29546 Score = 96.9 bits (106), Expect = 3e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || || || ||||| ||| |||||| Sbjct 18714 CCATAGGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTTTCAACATCAAGGCCAGCA 18655 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || ||||| || | ||| | ||| || || ||||| |||||||| Sbjct 18654 ATGCGGCCTGCATCCTTTGTGGCCTGACGTTGAGCATCATTGAAGTATGCTGGAACAGTG 18595 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || || || | | || |||||||| |||| |||||| | ||||| || Sbjct 18594 ATCACCGCTTTCGAGACAGATTTTCCAAGGTAAGATTCTGCTGTCTCCTTCATCTT 18539 >seq11297 Length=44683 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || || ||| ||||| ||| |||||| Sbjct 38528 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCAGCA 38469 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || ||||| || | ||| | ||| || ||||| || ||||||||| Sbjct 38468 ATGCGGCCAGCATCCTTCGTGGCCTGACGTTGAGCATCATTGAAATAAGCTGGAACAGTA 38409 Query 282464 ATAACGGC 282471 || || || Sbjct 38408 ATCACTGC 38401 >seq4406 Length=98560 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||| |||||| || | | ||||||||||||||||||||||| | | ||| Sbjct 39334 TTCTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTAATAATACGAAGAACT 39275 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | || || ||||| | || |||||||| || ||| |||||||||||||| || ||| Sbjct 39274 TCCAGCCCTGCAATACGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTAT 39215 Query 282452 GCAGGAACAGTAATAACGGCATCTGT 282477 || || || |||| || || | ||| Sbjct 39214 GCTGGGACTGTAACCACTGCTTTTGT 39189 >seq9702 Length=61918 Score = 91.5 bits (100), Expect = 1e-12 Identities = 196/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || || || || |||||||| | | ||| | || | ||||| | || | ||| Sbjct 16446 CGGTTGTCGAAGTCCTCACCTCCAAGGTGAGTGTCACCCGCAGTAGCCTTCACCTCGAAG 16387 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | || || |||| | | || | |||||| || |||||||| | || || || Sbjct 16386 ATGCCCTCCTCAATGGTGAGGAGTGACACATCAAACGTGCCACCACCGAGGTCGAAGATG 16327 Query 282308 AGTACATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || |||||| | || | ||| || ||||||||||| || |||| |||||| Sbjct 16326 AGCACATTCTTCTCGCCCGCGCTGCTGGCCTTCTTATCAAGACCGTAGGCAATGGCAGCA 16267 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || || |||||||| || || | || |||||||| || ||||| || ||||| || Sbjct 16266 GCTGTGGGTTCATTGATGATACGCATCACATTAAGGCCGGCAATGACACCGGCATCCTTG 16207 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||| || || || || ||||| || || || || || || | || |||| Sbjct 16206 GTGGCCTGCCTCTGCGAGTCGTTGAAGTAGGCCGGCACTGTCACCACAGCAT 16155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739774366084536