Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11736 147 4e-30 seq12936 140 6e-28 seq12004 118 2e-21 seq9352 116 7e-21 seq12418 113 9e-20 seq12070 111 3e-19 seq8356 111 3e-19 >seq11736 Length=148999 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | ||| || ||||| || ||||| || || || |||| Sbjct 10004 TACCACCCCTCAGACGCAGGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 9945 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| |||||||| || ||||||||||| || || || || || || | Sbjct 9944 CCAGGGTGCGGCCGTCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGG 9885 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| ||||| ||||| ||||| || || | || | || Sbjct 9884 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTC-TGAGCTCTCG 9826 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||| || |||||||| || | ||||| ||||| |||||||| Sbjct 9825 ACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 9776 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||||| || | || ||||||||||| ||||| || || || |||| Sbjct 10230 CCTCCCCTGAGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCC 10171 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || || ||||||||||| || || || || || || || Sbjct 10170 AATGTGCGCCCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 10111 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || |||||||| || || ||||| || || || || || | || || Sbjct 10110 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTC-GGAGCTCTCAAC 10052 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| ||||| | ||||| || || |||||||| Sbjct 10051 CTCGAGAGTGATGGTCTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 10004 >seq12936 Length=140512 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||||| || || || || || || || ||||| | Sbjct 38870 CCTCCACGTAGACGGAGGACAAGGTGCAAGGTGGACTCCTTTTGAATGTTGTAATCTGCA 38929 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| || | ||| || |||||||| Sbjct 38930 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGGA 38989 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || ||||||||||| || ||||| |||||||| ||| || || || Sbjct 38990 ATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCAGAAGACTCCACC 39049 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 39050 TCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 39096 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG--AATTCTAC 82653 |||||||| | |||||| | || || ||| || || ||||||| || ||| Sbjct 41960 CGCAGAACAAGGTGCAGGGAGGACTCCTTCA--ATGTTGTAATCAGTAAGTGAATGGG-- 42015 Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713 | || || || || || || ||| |||| || | || || |||| || || || |||| Sbjct 42016 CATCCTCAAGCTGCTTGCCGGCATAGATAAGGCGCTGCTGGTCTGAGGGAATCCCCTCCT 42075 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 | | ||||||||||| || || || || ||||| ||| | || || || | |||| Sbjct 42076 TGTACTGAATCTTTGCCTTGACTTTGTCGATCGTGTCAGATGACTCCACCTCGAGGGTTA 42135 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || | ||||| ||||| |||||||| Sbjct 42136 TCGTCTTGCCAGTTAGAGTCTTCACAAAGATCTGCAT 42172 >seq12004 Length=146743 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || |||||||| ||||| || || || || | || | | || Sbjct 145841 CGCAGGACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA 145782 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || || || ||||| Sbjct 145781 TCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTG 145722 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || ||||| || ||| | || || |||| || || Sbjct 145721 TCTTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGACGACTCGACCTCCAGCGTGATG 145662 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||||| ||||| ||||| |||||||| Sbjct 145661 GTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 145627 >seq9352 Length=67289 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || | ||| || || ||||| ||||| || || || |||| Sbjct 47377 TACCACCACGCAGACGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 47436 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||||||||| || || || || || || | Sbjct 47437 CGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGG 47496 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| || || || || | || | Sbjct 47497 GAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGACTCGA 47556 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 47557 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 47605 >seq12418 Length=36051 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | ||| || | ||| || ||||| || || || || | || | | ||| Sbjct 33108 CGCAGAACCAGGTGGAGTGGAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGTCCG 33167 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||| || |||||||||||||| | || || || || || || || ||||| Sbjct 33168 TCCTCAAGTTCCTTACCAGCAAAGATTAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 33227 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || ||| | || || |||| || || Sbjct 33228 TCCTGGATCTTCGCCTTCACATTGTCAATAGTGTCAGACGACTCCACCTCCAGGGTGATG 33287 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | |||| ||||| ||||| |||||||| Sbjct 33288 GTCTTTCTGGTCAGGGTCTTCACAAAGATCTGCAT 33322 Score = 100 bits (110), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| || ||||| || ||||| || || || |||| | | | ||||| Sbjct 33793 AGTACGAGGTGGAGGGTAGACTCCTTCTGGATGTT-TAGTCAGCATGCGTCCGCCCGTCC 33851 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| || | || ||||| || | || || ||||| || Sbjct 33852 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCCGGTTGGATCCCCTCCTTGTCC 33911 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 | |||||||| || ||||| ||||| ||||| | || || || | || || ||| Sbjct 33912 TAGATCTTTGCCTTGACATTGTCAATTGTATCCGAGGACTCGACCTCGAGGGTGATGGTC 33971 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| | ||||| ||||| |||||||| Sbjct 33972 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 34003 >seq12070 Length=146516 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| |||||||| || ||||| || || || || | || | | || Sbjct 65003 ACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC 65062 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 65063 ATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 65122 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || ||||| || || || || || || || ||| | || || |||||||| || Sbjct 65123 ATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAAGTGAT 65182 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 65183 GGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 65218 >seq8356 Length=84350 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 |||||| || || |||||||| || || || |||| | | | || || || || || Sbjct 46911 GTGCAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCAATCGTGCGCCCATCCTCCAGCTG 46852 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || || || ||||| || ||||| |||||||| |||||||| Sbjct 46851 CTTGCCAGCAAAGATAAGCTGCTGCTGCTCTGGTGGAATTCCCTCCTTATCCTGAATCTT 46792 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||| || ||||| ||||| || || | || || || | || || ||||| || || Sbjct 46791 TGCCTTGACATTATCAATTGTGTCGGATGACTCCACCTCAAGGGTGATTGTCTTCCCAGT 46732 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 46731 GAGGGTCTTCACAAAGATCTGCAT 46708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981607861030804