Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12004 98.7 7e-16 seq11548 95.1 8e-15 seq12880 86.0 4e-12 >seq12004 Length=146743 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || ||| ||| || |||||||| ||||| | | Sbjct 145625 CCACCACGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCG 145566 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| |||| |||| || || ||||| || || | |||||||| || |||| Sbjct 145565 AGTGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 145506 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| ||| || | || || || ||||| Sbjct 145505 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCA-CATTATCGATTGTATCAGACGACTCCAC 145447 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 145446 CTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 >seq11548 Length=265335 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| ||| || || |||||||| |||| Sbjct 39799 ACCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 39740 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || |||||||| |||| ||||||||| || | || Sbjct 39739 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGG 39680 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| ||||| |||| | | |||| ||||||| || | Sbjct 39679 GATGCCCTCCTTGTCCTGGATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCAA 39621 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || |||||||||||||| Sbjct 39620 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 39572 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || |||||||| || || |||||||| || | Sbjct 38874 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 38815 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || ||||| || || | |||||||| ||| | || Sbjct 38814 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 38755 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| | |||||| || ||||| Sbjct 38754 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCGATGGTGTCAGAAGACTCCAC 38696 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 38695 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 38648 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || ||||||||||| || || |||||||| || | Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 39511 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||| || || |||||||||| |||||||| || | || Sbjct 39510 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGA 39451 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 39450 ATGCCCTCCTTGTC 39437 >seq12880 Length=140709 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 18828 CACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 18887 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| || |||| | || || || || Sbjct 18888 GAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTG 18947 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || ||||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 18948 AATCTTGGCTTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCT 19006 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 19007 TTCCCGTCAGGGTCTTCACGAAGATCTGCAT 19037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328634149989120