Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq11736 114 3e-20 seq12936 102 2e-16 seq12070 102 2e-16 seq12418 100 7e-16 seq12004 100 7e-16 seq12880 96.9 8e-15 seq15625 93.3 1e-13 seq8841 89.7 1e-12 seq16525 87.8 4e-12 seq8356 87.8 4e-12 >seq11736 Length=148999 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| || || |||||| | || || || || || ||| Sbjct 10007 CAGATCTTCGTCAAGACTCTCACAGGGAAGACCATCACTCTCGAGGTTGAGAGCTCCGAC 10066 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || |||||| || Sbjct 10067 ACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 10126 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||| ||||| | || ||||| || |||||| | Sbjct 10127 AGGCTCATCTTTGCTGGGAAGCAGCTGGAGGATGGGCGCACATTGGCTGACTACAACATT 10186 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||||||||| ||||| Sbjct 10187 CAGAAGGAATCTACTCTTCATCTTGT 10212 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| ||||||||||||| |||||| Sbjct 10235 CAGATCTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAAAGCTCTGAC 10294 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || || || Sbjct 10295 ACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCTGATCAGCAG 10354 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || |||||||| || |||||| |||| || || | || ||||| ||||||||| | Sbjct 10355 AGGCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGTACCTTGGCAGATTACAACATT 10414 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || |||||||| ||||| Sbjct 10415 CAGAAGGAATCCACTCTTCATCTTGT 10440 >seq12936 Length=140512 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| ||||||| Sbjct 39093 CAGATCTTTGTGAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 39034 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || ||||||||| || ||| ||| Sbjct 39033 ACGATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAGCAA 38974 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || || || | || | || ||||||||| | Sbjct 38973 CGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTTGCAGATTACAACATT 38914 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || | |||||||| Sbjct 38913 CAAAAGGAGTCCACCTTGCACCTTGT 38888 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| || || || ||||||||||| || || ||| ||||| |||| Sbjct 38625 AAGACGCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCTTCAGACACTATCGACAAT 38566 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || | || || || Sbjct 38565 GTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTCATTTTT 38506 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || |||| ||||||||| ||||||| || || Sbjct 38505 GCCGGCAAGCAGCTTGAGGACGGGCGTACCCTGGCGGATTACAACATCCAGAAGGAATCC 38446 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || | ||||| Sbjct 38445 ACCCTCCATCTTGTCCTGCGCCTTCG 38420 >seq12070 Length=146516 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| ||||| |||||||| |||| Sbjct 65203 AAGACTCTTACTGGCAAGACCATCACTTTGGAGGTGGAGTCATCTGACACCATCGACAAC 65144 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | || ||||| Sbjct 65143 GTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTCATCTTT 65084 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | || |||| || |||||| ||||||| |||||| Sbjct 65083 GCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAACATCCAGAAGGAGTCT 65024 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 65023 ACTCTCCACCTGGT 65010 >seq12418 Length=36051 Score = 100 bits (110), Expect = 7e-16 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| |||| | || || || ||||| || | || ||| Sbjct 33524 ACTGGAAAGACCATCACACTGGAGATTGA--GTCCTCACACAATCAACAATGTGAAGGCG 33467 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || || || ||| | |||| || | || ||||| ||||| ||| Sbjct 33466 AAGATTCAGGACAAGGAGGGCATTCCACTGGACCAACAGCGTCTCATCTTTGCCGGGAAG 33407 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | || ||||| ||||||||| | ||||||||||| || |||||| Sbjct 33406 CAGCTTGAGGATGGCCGCACCTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTTCAC 33347 Query 206374 CTTGTTTTGAGACT 206387 ||||| | ||||| Sbjct 33346 CTTGTGCTCAGACT 33333 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| | ||||||||||| || ||||||||||| | || || |||||||| || | Sbjct 33333 AGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAGGTGCGG 33392 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| || |||||||| ||||| ||||| || || ||||| Sbjct 33393 CCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGCTGTTG 33433 >seq12004 Length=146743 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || ||||| | || || || || ||| Sbjct 145174 CAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACACTAGAGGTTGAGTCCTCAGAC 145233 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || ||| |||||| || Sbjct 145234 ACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAGCAG 145293 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | || ||||| | || || || || |||||| | Sbjct 145294 CGTCTCATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACCTTAGCTGACTACAACATT 145353 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||||||||| || ||||||||||| | ||||| Sbjct 145354 CAGAAAGAGTCCACCCTTCACCTTGTGCTCAGACT 145388 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || ||||| |||| ||||| ||||| Sbjct 145402 CAGATCTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGTCGTCTGAT 145461 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| ||||| || || || || ||||||| || Sbjct 145462 ACAATCGATAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCAG 145521 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | || ||||| ||| | Sbjct 145522 CGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACACTCGCGGATTATAACATA 145581 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 145582 CAGAAGGAGTCCACCCTGCAC 145602 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| | ||||||||||| || ||||||||||| | || |||||||| || || | Sbjct 145388 AGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCTAAGGTGCGA 145329 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| || |||||||| || |||||||| || || || || Sbjct 145328 CCATCCTCAAGCTGCTTCCCCGCGAAGATGAGACGCTGCTG 145288 >seq12880 Length=140709 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| ||||| ||||| || ||||| |||| Sbjct 19022 AAGACCCTGACGGGAAAGACCATCACGTTGGAGGTGGAGTCCTCGGACACCATCGACAAC 18963 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || || || || || ||||||| || | || ||||| Sbjct 18962 GTGAAAGCCAA-GATTCAGGATAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTCATCTT 18904 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 18903 CGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTC 18844 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 18843 CACACTCCACCTGGT 18829 >seq15625 Length=123999 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| |||| ||||| || ||||| |||| Sbjct 106672 AAGACGCTGACGGGGAAGACGATCACCCTGGAGGTGGAGAGCAGCGACACCATCGACAAC 106731 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || ||||||| || | || |||||| Sbjct 106732 GTCAAGGGCAAGATCCAGGACAAAGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 106791 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || || | ||||| |||||| ||||||| ||||| Sbjct 106792 GCCGGCAAGCAGCTCGAGGACGGCCACACGCTCGCCGACTACAACATCCAGAAGGAGTCG 106851 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 106852 ACGCTGCACCTGGT 106865 >seq8841 Length=75027 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 23644 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 23585 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || || || ||||||| || | || |||||| Sbjct 23584 GTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 23525 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 23524 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 23465 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 23464 ACGCTGCACCTGGT 23451 >seq16525 Length=119402 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||| || ||||| ||||||| ||| ||||| |||| || | ||||| ||| Sbjct 81099 ACCAGGTGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCATCCTCC 81040 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| |||||||| || || || ||| Sbjct 81039 AGCTGCTTTCCCGCGAAGATGAGGCGCTGCTGA 81007 >seq8356 Length=84350 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| || ||| Sbjct 46711 CAGATCTTTGTGAAGACCCTCACTGGGAAGACAATCACCCTTGAGGTGGAGTCATCCGAC 46770 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||| || || || |||||| || || || Sbjct 46771 ACAATTGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGAATTCCACCAGAGCAGCAG 46830 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || || |||||| |||| ||||| | || | || || |||||| | Sbjct 46831 CAGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACGATTGCTGACTACAACATT 46890 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| || || ||||| Sbjct 46891 CAGAAAGAGTCCACCCTGCACCT 46913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181556782710556