Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq16913 268 3e-67 seq12982 156 1e-33 seq8160 104 7e-18 seq12273 82.4 2e-11 >seq16913 Length=117496 Score = 268 bits (296), Expect = 3e-67 Identities = 528/772 (68%), Gaps = 38/772 (5%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 95215 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT- 95157 Query 19571 CCGTGTCTCCTT----GCAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACC 19626 |||| || || ||| | |||| | | ||||| || ||||| || ||||| || Sbjct 95156 CCGTACCTTATTAACCGCAACTTCCATAT---TTATTATCGCCTTCATCGCTGCTCCTCC 95100 Query 19627 AGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACAT 19686 || || |||||||| || || || || || || || | |||||| ||||||| || Sbjct 95099 GGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATAT 95040 Query 19687 CATATCGGGAGCCGTCGTTCCG--AGCAGCAAT----------------GCCATCGGACT 19728 ||||| || || | |||| || | | || || |||||| | Sbjct 95039 TATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATT 94980 Query 19729 ACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 || || |||||||||||| || || || ||||||||||| | || || | || || Sbjct 94979 GCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCC 94920 Query 19789 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTG 19848 | | || | || | | || | |||| | | ||| ||||| || ||||| Sbjct 94919 TTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTG 94860 Query 19849 GG-AACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 || ||||||| | || || || | | | ||||||||| | |||| || || ||||| Sbjct 94859 GGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCT- 94801 Query 19908 TTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATG 19967 ||||||| || ||| || || | || ||| | ||||||| || || |||||||||| Sbjct 94800 TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATG 94741 Query 19968 CTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATA 20027 | ||||||| || || || |||| ||||||| || | |||||||| | || || | Sbjct 94740 GTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACA 94682 Query 20028 ACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTAT 20087 |||| || ||||| | || |||||| | ||| | |||||||||||||| || || | Sbjct 94681 ACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT---T 94625 Query 20088 TCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAG 20146 |||| | ||||| ||||| | | || || | | ||| | | || || |||||| | Sbjct 94624 TCAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAACCACTGAAAAT 94566 Query 20147 GAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAG 20204 || ||| | || | |||||||| ||||| |||||||||||||| | ||| ||||| | Sbjct 94565 GA--GTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 20205 CCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAA 20256 | ||||| ||||| ||||| || || ||||| ||||| ||| |||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAA 94456 >seq12982 Length=32303 Score = 156 bits (172), Expect = 1e-33 Identities = 320/467 (69%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 19533 ACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCA 19592 |||||||||| | || |||||||| ||||||| || | || ||| || | Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACT 559 Query 19593 TCTG--CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | ||| ||||| | ||||| || ||||| ||||| || |||||||| || || || Sbjct 560 TCCGTACTT-ATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 618 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 || || || ||| | |||||||||||| || || || || || | |||| | Sbjct 619 GCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTA- 677 Query 19711 CAGCAATGCC-ATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAAT 19769 | || | |||||| | || || |||||||||||| ||||| || ||||||||| Sbjct 678 CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 19770 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATG 19829 || | ||||| || || || | | || | || | || ||| | |||| | | Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTT 797 Query 19830 CTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTG 19889 ||| |||| || || ||||||||||| | | || || ||| | | ||||||| || Sbjct 798 GTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTG 857 Query 19890 TTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGT 19948 |||| || || ||||| ||||||| || |||| | ||||| | | ||||| ||||| Sbjct 858 TTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTAT-TTTCTTGATTTACCCTATTGGT 916 Query 19949 CAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTT 19995 || | || || || |||| ||||||||| || || || ||||| || Sbjct 917 CAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 104 bits (114), Expect = 7e-18 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 |||||||| |||| ||||||||||||||||||| || || || ||||||| ||| ||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACT 20273 || || || ||||||||||| || ||||||||| |||||| |||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq12273 Length=37008 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 20262 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 20321 ||||| ||||||||||| | ||||| ||||| || |||||||| |||||| |||| || | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 20322 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTTC 20356 | || ||| ||||| || || || || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148797984624888