Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq16913 221 4e-53 seq12982 129 2e-25 seq8160 95.1 4e-15 seq12273 80.6 8e-11 >seq16913 Length=117496 Score = 221 bits (244), Expect = 4e-53 Identities = 515/770 (67%), Gaps = 34/770 (4%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 95215 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT- 95157 Query 28699 CCGTGTCTCCTT----GCAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACC 28754 |||| || || ||| | |||| | | ||||| || ||||| || || || || Sbjct 95156 CCGTACCTTATTAACCGCAACTTCCATAT---TTATTATCGCCTTCATCGCTGCTCCTCC 95100 Query 28755 AGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACAT 28814 || || |||||||| || || || ||||| || | | | || ||| ||||||| || Sbjct 95099 GGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATAT 95040 Query 28815 CATATCGGGAGCCGTCGTACCG--AGCAGCAAT----------------GCCATCGGACT 28856 ||||| || || | | || || | | || || |||||| | Sbjct 95039 TATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATT 94980 Query 28857 ACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 || || |||||||||||| || || || ||||||||||| | || || | || || Sbjct 94979 GCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCC 94920 Query 28917 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTG 28976 | | || | || | | || | |||| || | ||| ||||| || ||||| Sbjct 94919 TTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTG 94860 Query 28977 GG-AACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 || ||||||| | || || || | | | || |||||| | | ||||| |||||||| Sbjct 94859 GGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTT 94800 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACG 29095 | ||||| || ||| |||||| | || ||| | | |||||||| ||| ||| | Sbjct 94799 T-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATG 94741 Query 29096 CGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATA 29155 ||||||| || || || || | ||||||| || | || ||||| | || || | Sbjct 94740 GTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACA 94682 Query 29156 ACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTAT 29215 |||| || ||||| | || |||||| | || | ||||| || ||||| || || | Sbjct 94681 ACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT---T 94625 Query 29216 TTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGAC 29274 | || | ||||| ||||| |||| || || | ||| | | || || |||||| | Sbjct 94624 TCAGCGTTATGCATGGTTC-CTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAAT 94566 Query 29275 ATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCC 29334 ||| || | |||||||| ||||| |||||||||||||| | ||| ||||| || Sbjct 94565 GAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCT 94506 Query 29335 GCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAA 29384 ||||||||||| ||||| || || ||||| ||||||||| ||||||| || Sbjct 94505 GCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAA 94456 >seq12982 Length=32303 Score = 129 bits (142), Expect = 2e-25 Identities = 312/466 (67%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 28661 ACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCA 28720 |||||||||| | || |||||||| ||||||| || | || ||| || | Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACT 559 Query 28721 TCTG--CTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | ||| ||||| | ||||| || || || ||||| || |||||||| || || || Sbjct 560 TCCGTACTT-ATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 618 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||||| |||| | | | |||||||||| || || || || || | | || | Sbjct 619 GCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTA- 677 Query 28839 CAGCAATGCC-ATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 28897 | || | |||||| | || || |||||||||||| ||||| || ||||||||| Sbjct 678 CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAAT 737 Query 28898 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATG 28957 || | ||||| || || || | | || | || | || ||| | |||| || | Sbjct 738 GGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTT 797 Query 28958 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTG 29017 ||| |||| || || ||||||||||| | | || || ||| | | |||||| || Sbjct 798 GTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTG 857 Query 29018 TCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTC 29077 | ||||| |||||||| || |||| || |||| ||||| | | ||||| | |||| Sbjct 858 TTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTC 917 Query 29078 AAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTT 29123 ||| |||| || | |||||||| || || || || || || Sbjct 918 AAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 4e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 |||||||| |||| ||||||||||||| ||||| || || || ||||| | ||| ||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACT 29401 || || || |||||||||||| || |||||| || |||||| |||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq12273 Length=37008 Score = 80.6 bits (88), Expect = 8e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 29390 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 29449 ||||| ||||||||||| | ||||| ||||| || |||||||| |||||| |||| || | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 29450 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 | || ||| ||||| || || || || ||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTT 29443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146635232520856