Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq16913 291 2e-74 seq12982 185 2e-42 seq8160 82.4 2e-11 >seq16913 Length=117496 Score = 291 bits (322), Expect = 2e-74 Identities = 530/769 (69%), Gaps = 34/769 (4%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 95214 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGAT-C 95156 Query 18791 CGTGTCTCCTT----GCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCT 18846 ||| || || ||| || | || | | ||||| |||||||| ||||| ||||| Sbjct 95155 CGTACCTTATTAACCGCAACTTCCATATTT---ATTATCGCCTTCATCGCTGCTCCTCCG 95099 Query 18847 GTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATC 18906 ||||| |||||||| || || ||||||||| | | | | |||||| ||||||| || Sbjct 95098 GTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATT 95039 Query 18907 ATATCGGGAGCCGTCGTTCCG--AGCAGCAAT----------------GCCATCGGACTA 18948 ||||| || || | |||| || | | || || |||||| | Sbjct 95038 ATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTG 94979 Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 || || |||||||||||| || || || ||||||||||| | || || | || || Sbjct 94978 CATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCT 94919 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | | || | || | | || | |||| || | ||| ||||| || |||||| Sbjct 94918 TCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 94859 Query 19069 G-AACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGT 19127 | ||||||| | || || || | ||||||||||||| | |||| || ||||||||| | Sbjct 94858 GGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCT-T 94800 Query 19128 TGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGC 19187 ||| || || ||| || ||| | || || | |||||||||| || ||| | Sbjct 94799 TGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGG 94740 Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 | ||||||| || || ||||| ||||||| || |||||||||||| || || || Sbjct 94739 TGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAA 94681 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| ||||| | || |||||| | ||| | |||||||| |||||||| || || Sbjct 94680 CATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT---TT 94624 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGG 19366 || | ||||| ||||| | | || || | | ||| | | ||||| |||||| | | Sbjct 94623 CAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATG 94565 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 ||| || | || ||||| ||||| |||||||||||||| | ||| || || |||| Sbjct 94564 AGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTG 94505 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAA 19475 |||| || ||||||||||| | || || || || || | |||||||| Sbjct 94504 CTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAA 94456 >seq12982 Length=32303 Score = 185 bits (204), Expect = 2e-42 Identities = 338/487 (69%), Gaps = 6/487 (1%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||| | |||| || || || |||||||||| ||||| |||||||| ||||||| | Sbjct 480 ACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCC 539 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGTT-TCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | || | ||||| ||||||| ||||| ||||| || Sbjct 540 C-TACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCCTCCAGT 597 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||| || || Sbjct 598 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTAT 657 Query 18909 ATCGGGAGCCGTCGTTCCGAGCAGCAATGCC-ATCGGACTACACTTCTACCCAATTTGGG 18967 || || || | |||| | | || | |||||| | || || |||||||||||| Sbjct 658 CTCTGGTGCTATTATTCCTA-CTTATGTGACGATCGGATTGCATTTTTACCCAATTTGGA 716 Query 18968 AAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCC 19027 ||||| || ||||||||||| | ||||| || || || | | || | || | | Sbjct 717 AAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTAC 776 Query 19028 ACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAG 19087 | ||| | |||| || | ||| |||| || || ||||||||||| | | || | Sbjct 777 ATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGG 836 Query 19088 GGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCT 19147 | ||||||| ||||||| |||||| || |||||||||||||| | || |||| | | Sbjct 837 GTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTT 896 Query 19148 TCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTG 19207 || | | || || ||||||||| ||| || | ||||||||| || || || Sbjct 897 TCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATATCTG 956 Query 19208 GTACGTT 19214 |||| || Sbjct 957 GTACTTT 963 >seq8160 Length=957 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || ||||| |||| ||||||||||||| ||||| ||||| |||||||||| |||||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACA 19490 ||||| | || ||||| || | |||||||| |||||| |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACA 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141119574788088