Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq16913 320 2e-82 seq10113 266 4e-66 seq12982 197 2e-45 seq666 163 3e-35 seq12572 140 4e-28 seq8160 91.5 2e-13 >seq16913 Length=117496 Score = 320 bits (354), Expect = 2e-82 Identities = 571/824 (69%), Gaps = 31/824 (4%) Strand=Plus/Minus Query 157631 ATGGCTTCAACTCTTACA-AGACAACAAA---CATCCCCGTGGAATAACTTCTGCGAGTG 157686 ||| |||||| | ||| | ||||| ||| || || |||| | |||||||| | || Sbjct 95269 ATGACTTCAATT-TTAGAGAGACACGAAAGTACAAGCCTGTGGGGTCACTTCTGCAACTG 95211 Query 157687 GGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTAC 157746 | |||| ||| | |||||| | || | || ||||||||||| ||||||| | ||| Sbjct 95210 GATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGTAC 95151 Query 157747 GTTGCTTGCTGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACAT 157806 || | | |||||| | || || |||||||| |||||||||| || || || || Sbjct 95150 CTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGATAT 95091 Query 157807 TGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 157866 ||| || || || || || ||| || |||| | | ||| | ||||| || || ||||| Sbjct 95090 TGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGG 95031 Query 157867 TGCAGTTGTTCCT--AG---------TTCAAAC-------GCAATCGGTCTCCACTTCTA 157908 ||| || ||||| || ||| || |||||||| | || || || Sbjct 95030 TGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTA 94971 Query 157909 CCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 157968 ||| || ||| || | |||||| |||| || ||| | || || ||||||||| | || Sbjct 94970 CCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCT 94911 Query 157969 TGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGG-AACTCT 158027 | || | | || | | || | | |||||||| |||||||||| |||| Sbjct 94910 AATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTA 94851 Query 158028 CTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAG 158087 || |||| | |||| |||||| ||||| | | |||||||| ||||| | || || | Sbjct 94850 GTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCTTT-GCAGCTG 94792 Query 158088 CGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTC 158147 | ||||| || ||| | || || || | |||||||| ||||||||||| | ||||| Sbjct 94791 CTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTT 94732 Query 158148 TTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTA 158207 | || || ||||||| ||| |||| || |||||||||| | ||| ||||||||||||| Sbjct 94731 TAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTA 94673 Query 158208 TGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTA 158267 |||| | || || ||| | ||| | ||||| |||||||| || || |||| | || Sbjct 94672 TGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC---TTTCAGCGTTA 94616 Query 158268 TGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAG 158326 ||||||| | | || | || | | || | ||||| ||||||| ||||| Sbjct 94615 TGCATGGTTCCTTGGCAACCT-CTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCT 94557 Query 158327 AACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGC 158386 || | ||||| || || ||||||||||||||||| | || ||||| || || || || Sbjct 94556 AATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGT 94497 Query 158387 TACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 158430 || || ||||| || ||||| ||||| ||| | ||||||||||| Sbjct 94496 TATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 266 bits (294), Expect = 4e-66 Identities = 496/722 (69%), Gaps = 5/722 (1%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | |||| |||| | | | | || | ||||| ||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||||||| | || | || |||||| |||| || || |||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || |||||| ||||| || | | ||||||||| | ||||| ||| ||||| | Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGC-AATTTCTT 48391 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 48390 AACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGG 48331 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 | || || || || || || || || ||| | || || | ||| | ||||| Sbjct 48330 CCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGT 48271 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC- 159736 |||||||| || || || || |||||||| ||| |||| ||||||||| ||||| Sbjct 48270 CGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCA 48211 Query 159737 GTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT- 159795 |||| ||| | || ||||| ||||| ||| | |||||| |||| | ||||||| Sbjct 48210 GTCT-GTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTT 48152 Query 159796 GTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 159855 || ||||||||| | |||||| |||| || ||| | |||||||| | ||||| Sbjct 48151 GTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTT 48092 Query 159856 GGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915 || ||| || || ||| |||| | | ||| | || || || | || ||||| | Sbjct 48091 GGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTTA 48032 Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975 ||||| || ||||||||||| ||||| || || |||| | ||| ||| | || | ||| Sbjct 48031 AACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATC 47972 Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAG 160035 ||||| ||||| |||| ||||| | || |||||| || ||||| || || | Sbjct 47971 CATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTAT 47912 Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || | | | | ||||||| ||||| |||||||| ||| ||||| | ||| |||| ||| Sbjct 47911 GCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGG 47852 Query 160096 TC 160097 || Sbjct 47851 TC 47850 Score = 172 bits (190), Expect = 6e-38 Identities = 210/284 (74%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 160093 TGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 160152 ||||| || || || |||||| | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 160153 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAAC 160212 |||| | ||| || || ||| || | |||||||| | ||| || ||| | ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 160213 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAG 160272 || |||| || |||||| | ||| | || | |||||||||||||||||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 160273 ACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCT 160332 || ||||||||||| | || || || ||||| || ||| ||| ||||||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 160333 GATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 ||||| || |||||||| |||| ||||||||||| || ||||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 197 bits (218), Expect = 2e-45 Identities = 341/493 (69%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | | | |||| ||| | ||||| | || | || ||||| ||||| | Sbjct 472 CTTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGTT-TCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| || || | || || ||||| ||||||||| Sbjct 532 GATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTC 590 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | || ||||| |||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 || ||||||||||| || |||||| || | ||||| | || || ||||| | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | ||| |||| ||||| |||| || ||| | || || || ||||||| | || | | Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTG 770 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | || ||| | | || | | ||||||| ||||| |||||||| || || Sbjct 771 TTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCC 830 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 | | |||||||||| ||||| ||| |||||||| ||||| || || | || | || Sbjct 831 ATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 890 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | | ||| | | || ||| | ||||||| ||| || |||| ||||||| | || | Sbjct 891 CTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAA 950 Query 158154 TCTCTGGTACTTT 158166 | ||||||||||| Sbjct 951 TATCTGGTACTTT 963 >seq666 Length=229199 Score = 163 bits (180), Expect = 3e-35 Identities = 192/256 (75%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 160039 TTTGAGCCTA-CTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160097 ||| | |||| |||||| ||||| |||||||| ||||| ||||| | ||||| ||||| Sbjct 152535 TTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTC 152476 Query 160098 GCAGATCTTCGGTGTTGCATTTTCT-AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160156 || ||||| |||||||| |||||| || || | ||| | ||||| || ||||| |||| Sbjct 152475 TCAAATCTTTGGTGTTGC-TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTG 152417 Query 160157 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTC 160216 | || || | ||| |||||| |||||||| | |||| || ||||| ||||| | Sbjct 152416 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTAC 152357 Query 160217 GTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCT 160276 |||||| || ||| | ||||| || ||||| |||||||||||||||||||| | Sbjct 152356 GTGCTTGTGACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTT 152297 Query 160277 TCTACACCAAGAACAT 160292 |||| |||| || || Sbjct 152296 TCTATGCCAAAAATAT 152281 >seq12572 Length=34890 Score = 140 bits (154), Expect = 4e-28 Identities = 197/273 (72%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | ||||| |||||||| || || || || || || ||||||| |||| |||||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| ||||||| ||| ||| | | || ||||| ||| | ||||||||||| | Sbjct 26901 GAACTTGCTCGGTCT-GTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTT 26843 Query 159786 TGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGC 159845 ||||||||||| | |||||||| ||||||||||| || ||| |||||||||| Sbjct 26842 CGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGT 26783 Query 159846 ACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC---CTGTTGTTCCTTCAGGGTTTCCA 159902 | ||| || |||||||| || ||| ||||| || || ||| || ||| || Sbjct 26782 TTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTT---TTTTCA 26726 Query 159903 CAACTGGACCCTCAACCCCTTCCATATGATGGG 159935 || ||||| | ||||| || ||||||||||| Sbjct 26725 TAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 158303 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACC 158362 ||||| | ||||| ||||| || | ||||| || || | | |||||||||||||| Sbjct 318 GAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACC 376 Query 158363 TACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158422 || || || || || || |||| || || ||||| || ||||||||||| || ||| Sbjct 377 TATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTC 436 Query 158423 AACAACTCCCGTTCCTTGCACT 158444 |||||||| ||||| || |||| Sbjct 437 AACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572899109419200