Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq16913 320 2e-82 seq10113 183 4e-41 seq12982 172 7e-38 seq666 141 1e-28 seq12572 98.7 1e-15 seq8160 93.3 5e-14 >seq16913 Length=117496 Score = 320 bits (354), Expect = 2e-82 Identities = 537/775 (69%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 181100 ||||| | || | || | |||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 181101 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 181160 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 181161 ATCATCTCTGGTGCAGTTGTTCCATC-----------TTCCAAC-------GCAATTGGT 181202 || || |||||||| || |||| | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 181203 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 181262 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 181263 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAA 181322 |||| | || | || | | || | | || | | || ||||| ||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 181323 TGGG-AACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCC 181381 |||| |||| || ||| | |||| |||||| ||||| | ||||||| || ||||| Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 181382 AGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 181441 | ||||| || |||||| ||| | || || || | |||||||| |||||| || Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 181442 CGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCA 181501 | |||| | || || ||||||| ||||||| || |||| ||||| | |||||| Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 181502 CAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACT 181561 |||||| || |||||| | || |||||||| ||| | || |||||||| || ||||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT-- 94626 Query 181562 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAAC 181621 ||||| | ||||| ||||| |||| || ||| | || | || || ||||||| Sbjct 94625 -TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 181622 TGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGC 181681 |||||| || | |||||||| || || |||||||||||||||| || ||||| || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 181682 CGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCA 181736 || |||||||| |||||||| || ||||| ||||||||| | |||||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq10113 Length=56568 Score = 183 bits (202), Expect = 4e-41 Identities = 477/716 (67%), Gaps = 13/716 (2%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 ||||||||| | | | |||| | ||||| ||||| | |||||||| || | || Sbjct 48559 TGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCT 48500 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| |||| | || |||||| |||| || || ||||||| || || Sbjct 48499 TTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTT 48440 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 182548 |||| ||||| || | | | ||||||| | ||||| ||| | ||||||| | || || Sbjct 48439 GGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGC 48382 Query 182549 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 182608 || || |||||| || | | | || ||| | | ||||| ||||| | || Sbjct 48381 GGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGA 48322 Query 182609 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 |||||| |||| || || || ||| | || || || |||| ||| || |||||||| Sbjct 48321 ACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCA 48262 Query 182669 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTG 182727 || || || || || ||||||||| | | |||||||||| ||||| | ||| || Sbjct 48261 TGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTG-TTC 48203 Query 182728 GAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTC-GTCAGTGTG 182786 | | | ||||| ||||| ||| | || ||| |||| | ||| || || ||| Sbjct 48202 AATTGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTA 48143 Query 182787 TTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCG 182846 ||||| | ||||| ||||||| || || ||| || | || | ||||| | | Sbjct 48142 TTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAA 48083 Query 182847 GCGATCTT-CAGGT--TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCC 182903 | || || || | |||| || |||| ||| ||||| || ||||| | ||||| Sbjct 48082 GTTATATTTCAATTCATCCTTTTCTTCCA--AGGATTTCCT-AATTGGACGTTAAACCCA 48026 Query 182904 TTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGT 182963 || ||||||||||| ||||| || || | || | ||| ||||| | |||||||||| Sbjct 48025 TTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGG 47966 Query 182964 GTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTC 183023 | || |||| || || | | |||||| || ||||| || || | || | Sbjct 47965 GCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGT 47906 Query 183024 GATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTC 183079 | | ||||| | || || || ||||| ||| | || | || | |||||||| Sbjct 47905 AACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 150 bits (166), Expect = 2e-31 Identities = 205/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 183075 TGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTG 183134 ||||| ||||| || || ||| | ||| |||||| |||||||| || ||||||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 183135 TTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAAT 183194 |||| | ||| || || | | | | || ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 183195 CTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 183254 || |||| |||||||| | || | || | ||||||||||||||||| || ||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 183255 ACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCC 183314 || |||||||| || | || ||| | ||||| || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 183315 GATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 ||||| || |||||||| | || |||||||| || |||||||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 172 bits (190), Expect = 7e-38 Identities = 335/492 (68%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | || ||| | | || | | || |||| ||||| |||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 | |||||||||| ||||| ||||||||| || ||||| || |||| || |||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 | | ||| | | || ||| | ||||||| ||| ||||| | ||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 181460 CTCTGGTACATT 181471 |||||||| || Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| | || || || ||||| |||||||| || |||| |||||||| |||||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 || ||||| ||| |||||| | ||||| || ||||||||||| ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 183150 GGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 183209 ||| | ||| | | ||||||| | |||| || ||| | || || ||||||| ||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTA 183262 || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 152293 >seq12572 Length=34890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 346/534 (65%), Gaps = 10/534 (2%) Strand=Plus/Minus Query 182389 GGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTG 182448 |||| || || || ||| | |||||| || || | || |||| ||||||| | | Sbjct 27221 GGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 27162 Query 182449 CCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTG 182508 | || |||| |||| ||||| ||||||| || |||||| || | | | Sbjct 27161 CTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGG 27102 Query 182509 CTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGAT 182567 || ||||||| | |||||| || ||||||| | | | | || || ||||| || Sbjct 27101 CTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAAT 27043 Query 182568 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGG 182627 | | | || ||| | | ||| ||| || || | |||||| |||| || Sbjct 27042 AGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGT 26983 Query 182628 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 182687 ||||| ||| || | |||| ||| || |||||||| || || || || || ||| Sbjct 26982 TGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATT 26923 Query 182688 GGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTGGAATCAGACCTTACAATGC 182746 ||| ||| | | |||||||||||||||| | ||| || | | || ||||| Sbjct 26922 TTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTCAATTGTTTTTTTTTAATGC 26864 Query 182747 GATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGG 182806 ||| | || |||||||| | ||||| || || | | ||||| || ||||| |||| Sbjct 26863 AATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGG 26804 Query 182807 ACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGT---TCCT 182863 ||| || |||||| || | | ||||| || || || || || | | |||| Sbjct 26803 ACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT 26744 Query 182864 GTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGG 182917 || ||| || ||| || || |||||| | ||||| || ||||||||||| Sbjct 26743 TTTCTTCTTT---TTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 181616 TGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACAT 181675 ||||| |||||| || | |||||||| || | ||||||||||||| || || || Sbjct 325 TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTATAATAT 384 Query 181676 CGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTC 181735 || || || || | ||| |||||||| || |||||||||||| || ||||||||||| Sbjct 385 TGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTC 444 Query 181736 ACGTTCACTGCACT 181749 ||||| | |||| Sbjct 445 TCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614483644094080