Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq16913 306 5e-78 seq12982 196 7e-45 seq10113 188 1e-42 seq666 140 5e-28 seq8160 95.1 2e-14 seq12572 93.3 6e-14 >seq16913 Length=117496 Score = 306 bits (338), Expect = 5e-78 Identities = 526/757 (69%), Gaps = 30/757 (4%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| | ||| || ||| || Sbjct 95200 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGTACCTTATTAACC 95141 Query 174549 GCAACTGT-ATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| || ||| |||||||| ||| | | |||||| || || || || || || || Sbjct 95140 GCAACTTCCATATTT-ATTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTAT 95082 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || || |||| | | ||| ||||||| || || |||||||| || | Sbjct 95081 TCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTAT 95022 Query 174668 TCCT--AG---------TTCAAAC-------GCAATCGGTCTACACTTCTACCCAATCTG 174709 |||| || ||| || |||||||| | || || |||||||| || Sbjct 95021 TCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTG 94962 Query 174710 GGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTT 174769 | || | || | | || |||||| | || || ||||||||| | ||| |||| | Sbjct 94961 GAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCT 94902 Query 174770 CCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGG-AACTCTCTTATCGTT 174828 | || | ||||| | |||||||| |||||||||| |||| || ||| Sbjct 94901 ATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTC 94842 Query 174829 TAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAG 174888 | |||| | | |||||||| | | ||||| || || || ||||||| ||| || | Sbjct 94841 TGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTG 94783 Query 174889 TATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCT 174948 | ||| | || || || | |||||||| ||||| || | |||| || || || | Sbjct 94782 TTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATAT 94723 Query 174949 CTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCT 175008 |||| | ||||||| || | || ||||| | ||| || |||||| | ||||| | | Sbjct 94722 CTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCAT 94664 Query 175009 TCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCG--ATGCATGG 175066 | |||||||| || | || ||||| ||||| ||||| || ||||| |||||||| Sbjct 94663 TTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCTTT-----CAGCGTTATGCATGG 94609 Query 175067 TTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGG 175126 ||| | | |||||| | || | || || ||||||| |||||| || | || Sbjct 94608 TTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGG 94549 Query 175127 TTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGG 175186 |||||| || || |||||||||||||| | ||| |||||||| || || || || || || Sbjct 94548 TTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGG 94489 Query 175187 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCA 175223 ||| || ||||| ||||| ||| | |||||||||||| Sbjct 94488 TCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 196 bits (216), Expect = 7e-45 Identities = 322/462 (70%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 174498 CGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTA 174557 ||||||||| |||| ||||| |||||| | ||||| ||||| || || |||||||| | Sbjct 503 CGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TC 561 Query 174558 TGTT-TCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACC 174616 || | |||||| | ||| | | |||||| ||||| || || || || || ||||| || Sbjct 562 CGTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCC 621 Query 174617 AGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTC 174676 || ||||||| | || |||||||||| || ||||||||||| || |||||| || Sbjct 622 TGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTA 681 Query 174677 AAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCT 174736 | ||||| | || || |||||||| ||| |||| || | | || |||||| | Sbjct 682 TGTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTT 741 Query 174737 CTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTA 174796 ||||| || ||||||| | ||| |||| | || ||| | ||||| | || Sbjct 742 ATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTA 801 Query 174797 TATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGC 174856 ||||| ||||| |||||||| || | | | |||||| | | |||||| ||| || Sbjct 802 TATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGC 861 Query 174857 ATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGG 174916 ||| || || || ||||||| ||| | || | ||| | | || ||| | ||||||| Sbjct 862 ATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGA 921 Query 174917 TTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATT 174958 || || || | ||||| || || || ||||| || || Sbjct 922 AAGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 188 bits (208), Expect = 1e-42 Identities = 481/722 (67%), Gaps = 9/722 (1%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||| | | | || || ||| | ||| | | |||||||| | Sbjct 48567 TGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCT 48508 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| |||| | || || ||| |||| || || |||||||| Sbjct 48507 ATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGT 48448 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || |||||| |||||||| | | | ||||||| | || || ||| || || | | Sbjct 48447 AACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGC-AATTTCTTAA 48389 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 ||||||| || ||||||||| || | | | || ||| | | ||||| ||||| | Sbjct 48388 CAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCC 48329 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||| ||||| || || || || ||| | || || || ||| | ||||| | Sbjct 48328 TGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCG 48269 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCA-AGA 176210 ||||||| || || || || || || |||||| | ||||| ||||||| || || Sbjct 48268 CTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGT 48209 Query 176211 CTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTT-GT 176269 || | | | || || || || || ||| ||||| | |||| | | ||| ||| || Sbjct 48208 CTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGT 48150 Query 176270 CAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGG 176329 ||| || ||| | || ||| | || |||||| | |||||||| | ||||| Sbjct 48149 TTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGG 48090 Query 176330 TGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTC--AGGGTTTCCACAACTGGACACTG 176387 | | || || ||| |||| | | ||||||| ||| ||||| || ||||| | Sbjct 48089 CATAGAAGTTATATTTCAATTCATCCT-TTTCTTCCAAGGATTTCCT-AATTGGACGTTA 48032 Query 176388 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATC 176447 ||||| || ||||||||||| ||||| || || |||| | ||| || |||| | ||| Sbjct 48031 AACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATC 47972 Query 176448 CATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACT 176507 ||||| | ||| | ||||| || |||| |||||| || || |||||| | Sbjct 47971 CATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTAT 47912 Query 176508 GCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGG 176567 || | | | || || | ||||| || ||||| ||| | ||| | ||| |||| ||| Sbjct 47911 GCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGG 47852 Query 176568 TC 176569 || Sbjct 47851 TC 47850 Score = 127 bits (140), Expect = 3e-24 Identities = 200/284 (70%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 176565 TGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTG 176624 ||||| ||||| || || ||| | ||| ||||| |||||| | || ||||||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 176625 TTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAAT 176684 |||| | ||| || || | | | | | ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 176685 CTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAA 176744 || |||| |||||||| | ||| | || | ||||||||||||||||| ||||| Sbjct 890 CTATGTGCCTATGATTTCTTC--CCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 176745 ACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTG 176804 ||||||||||| || | || ||| | || || || | || ||||||||| || | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 176805 GATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848 ||||| || ||||| || ||||||| || || |||||||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq666 Length=229199 Score = 140 bits (154), Expect = 5e-28 Identities = 182/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 176529 GAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCG 176588 ||||| || ||||| ||||||||||| | ||||| ||||| |||||||| || ||||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGCT 152457 Query 176589 TTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 ||| ||||| | ||| | || ||||||||||| ||||| || |||| ||| | ||| Sbjct 152456 TTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATGG 152397 Query 176649 GTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGC 176708 | ||||||| | |||| || ||| | || || ||||||| ||| || | | Sbjct 152396 ATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTCC 152337 Query 176709 CAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTT 176768 || || || ||||| ||||||||||| ||||| |||||||| | || || || || Sbjct 152336 CAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT--TT 152279 Query 176769 CTTAACGAAGG 176779 |||| |||| Sbjct 152278 TTTAAACAAGG 152268 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 175095 GAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACC 175154 || |||| ||||| |||||| || | |||||||| || | |||||||||||||| Sbjct 318 GAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACC 376 Query 175155 TATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 175214 ||||| || ||||| || |||| || || ||||| || ||||||||||| || ||| Sbjct 377 TATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTC 436 Query 175215 AACAACTCACGCTCACTCCACT 175236 |||||||| || || | |||| Sbjct 437 AACAACTCTCGTTCTTTACACT 458 >seq12572 Length=34890 Score = 93.3 bits (102), Expect = 6e-14 Identities = 187/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Minus Query 176139 TGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 176198 ||| | ||||| |||||||| || || || || || ||| || ||| | ||||| ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 176199 GAACTGGCAAGAC----TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCC 176254 ||||| || | ||| | || | | || || ||| ||||| |||||| Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTT----AATGCAATTTCATTCTCTGGTCC 26846 Query 176255 TATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTT 176314 ||||||| ||||| | | || ||| | || ||||| || |||||| |||||||| Sbjct 26845 GTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTT 26786 Query 176315 TGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTC-C 176373 || | ||||| || ||||| || ||| ||||| | | ||||||| ||| | Sbjct 26785 TGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT-TTTCTTCTTTTTTTTTC 26727 Query 176374 ACAACTGGACACTGAACCCCTTCCATATGATGGG 176407 | || |||||| | ||||| || ||||||||||| Sbjct 26726 ATAATTGGACATTAAACCCATTTCATATGATGGG 26693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729770511843680