Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq16913 288 1e-72 seq10113 230 3e-55 seq12982 178 2e-39 seq12572 105 8e-18 >seq16913 Length=117496 Score = 288 bits (318), Expect = 1e-72 Identities = 530/775 (68%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 177968 ||||| | || | || | |||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 177969 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAAC 178028 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 178029 ATCATCTCTGGTGCAGTTGTTCCATC-----------TTCCAAC-------GCAATTGGT 178070 || || |||||||| || |||| | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 178071 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 178130 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 178131 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 178190 |||| | || | || | | || | ||||| | | || ||||| |||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 178191 TGGG-AACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCC 178249 |||| ||||| | |||| | |||| |||||| ||||| | | ||||| || ||||| Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 178250 AGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGA 178309 | ||||| || || || ||| |||| || || | |||||||| || || || Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 178310 CGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACA 178369 | |||| | || || ||||||| ||||||| || |||| ||||| | ||| || Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 178370 CAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACT 178429 |||||| || ||||| | || |||||||| ||| | || ||||||||||| ||||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT-- 94626 Query 178430 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAAC 178489 ||||| | ||||| ||||| |||| || ||| | | | ||||| ||||||| Sbjct 94625 -TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 178490 AGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGC 178549 || || || | ||||| || || || |||||||||||||||| || ||||| || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 178550 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCA 178604 || || || || || ||||| || ||||| ||||||||| | |||||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq10113 Length=56568 Score = 230 bits (254), Expect = 3e-55 Identities = 483/713 (68%), Gaps = 7/713 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||| | | | |||| | ||||| ||||| | |||||||| || | || Sbjct 48559 TGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCT 48500 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| |||| | || |||||| |||| || || ||||||| || || Sbjct 48499 TTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTT 48440 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGC 179410 |||| ||||| || | | |||||||||| | || || ||| | ||||||| | || || Sbjct 48439 GGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGC 48382 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || |||||| || | | | || ||| | | ||||| ||||| | || Sbjct 48381 GGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGA 48322 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 |||||| |||| || || || ||| | || || || |||| ||| || |||||||| Sbjct 48321 ACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCA 48262 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTC-GCCTGATTG 179589 || || || || || ||||||||| | | |||||||||| ||||| | ||| | Sbjct 48261 TGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTCA 48202 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTC-GTCAGTGTT 179648 | | | ||||| ||||| ||| | || ||| |||| | ||| || || ||| Sbjct 48201 ATTGCGG-CCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTA 48143 Query 179649 TTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCG 179708 ||||| | ||||| ||||||| || || ||| || | || | ||||| | | Sbjct 48142 TTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAA 48083 Query 179709 GCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTC 179768 | || || ||| | || ||| | || || || | || |||||| | ||||| || Sbjct 48082 GTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTT 48023 Query 179769 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTT 179828 ||||||||||| ||||| || || |||| | ||| ||||| | |||||||||| | | Sbjct 48022 CATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCT 47963 Query 179829 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGAT 179888 || |||| || || | | |||||| || ||||||||||| | || | | | Sbjct 47962 ACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAAC 47903 Query 179889 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 179941 | || || | ||||| |||||||| ||| ||||| | ||| |||| ||||| Sbjct 47902 GCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 134 bits (148), Expect = 2e-26 Identities = 202/285 (71%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 179937 TGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 179996 ||||| || || || ||| || | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 179997 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAAC 180056 |||| | ||| || || ||| || | |||||||| | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 180057 CTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAG 180116 || |||| || |||||| | ||| | ||| | |||||||||||||| || |||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 180117 ACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTT 180176 || ||||||||||| | |||||| | ||||| || | | ||| ||| ||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 180177 GATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCA 180221 ||||| || ||||| | ||||||| || || ||||| ||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 728 >seq12982 Length=32303 Score = 178 bits (196), Expect = 2e-39 Identities = 336/492 (68%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || | ||| | |||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || |||| ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 178148 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 178207 | || ||| | ||||| | | || |||| ||||| ||||||||| | || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 178208 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGC 178267 | | |||||||||| ||||| ||| ||||| || ||||| || |||| || | || Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 178268 AGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCAT 178327 | ||| || | || ||| | ||||||| |||||||| | ||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 178328 CTCTGGTACATT 178339 |||||||| || Sbjct 952 ATCTGGTACTTT 963 >seq12572 Length=34890 Score = 105 bits (116), Expect = 8e-18 Identities = 347/535 (65%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 179251 GGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTG 179310 |||| || || || ||| | |||||| || || | || |||| ||||||| | | Sbjct 27221 GGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 27162 Query 179311 CCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTG 179370 | || |||| |||| ||||| ||||||| || |||||| || | | | Sbjct 27161 CTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGG 27102 Query 179371 CTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGAT 179429 ||||||||||| | || ||| || ||||||| | | | | || || ||||| || Sbjct 27101 CTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAAT 27043 Query 179430 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGG 179489 | | | || ||| | | ||| ||| || || | |||||| |||| || Sbjct 27042 AGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCGT 26983 Query 179490 TGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATT 179549 ||||| ||| || | |||| ||| || |||||||| || || || || || ||| Sbjct 26982 TGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATT 26923 Query 179550 GGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTG----ATTGGTATCAGACCTTACA 179604 ||| ||| | | ||||||||||||||||| ||| |||| | | || | Sbjct 26922 TTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGTTTTT-----TTTTA 26868 Query 179605 ATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTT 179664 |||| ||| | || |||||||| | ||||| || || | ||||||| || ||||| Sbjct 26867 ATGCAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCAC 26808 Query 179665 TGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCT 179724 ||||||| || |||||| || | | ||||| || || || || || | ||| Sbjct 26807 TGGGACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCA 26748 Query 179725 TGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGG 179779 | || ||| | ||| || || ||||| | ||||| || ||||||||||| Sbjct 26747 TCCTTTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605877520207680