Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq10113 297 2e-75 seq16913 286 4e-72 seq12982 172 6e-38 seq666 123 3e-23 seq12572 120 3e-22 seq8160 95.1 1e-14 seq12503 93.3 5e-14 >seq10113 Length=56568 Score = 297 bits (328), Expect = 2e-75 Identities = 506/724 (70%), Gaps = 9/724 (1%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||| | | | |||| | ||| |||||||| | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||||||| ||||| | || |||||| |||| || || ||||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 160077 | ||| ||||||||||||||| | | |||||||||| | || || ||||| ||||| Sbjct 48449 GTAACTTCTTGGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCT 48392 Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 160136 || ||||| | |||| |||||| ||| | | | | || ||| | | || || |||| Sbjct 48391 TAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGG 48332 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATC-CAACTTGGGGGACTCTGGAATTTT 160195 | | || | || |||||||| | || ||| ||| | || || || |||| |||| Sbjct 48331 GCCTGGAAGAACAGGGGGATTTTA-CTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTT 48273 Query 160196 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 160255 || || |||||||| || || ||||| || |||||| | ||||| ||||||| || Sbjct 48272 GTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCT 48213 Query 160256 C-GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTT 160314 | |||| || | | || ||||| ||||| ||| | |||||| |||| | ||| || Sbjct 48212 CAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTT 48154 Query 160315 T-GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373 | || |||||||| | || ||| |||| || || ||| ||| || | | | | Sbjct 48153 TTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTT 48094 Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433 |||| | | || || ||| |||| | | ||| | |||||||||| || |||||| Sbjct 48093 TTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGT 48034 Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493 | ||||| || ||||||||||| ||||| || || |||| | ||| ||||| | | | Sbjct 48033 TAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTA 47974 Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553 ||||||| | ||| |||| ||||| || | |||||| || ||||||||||| Sbjct 47973 TCCATGGGGCTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCT 47914 Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613 | || | | | | || || | ||||| |||||||| ||| ||||| | ||| |||| | Sbjct 47913 ATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTT 47854 Query 160614 GGTC 160617 |||| Sbjct 47853 GGTC 47850 Score = 118 bits (130), Expect = 1e-21 Identities = 210/304 (69%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 160613 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 160672 ||||| || || || ||| || | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 160673 TTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAAT 160732 |||| | ||| || || | | || | ||||||| | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 160733 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAG 160792 || |||| || |||||| | || | || | |||||||||||||| ||||||||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 160793 ACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCC 160852 || ||||||||||| | || || | ||||| || | | ||| ||| | ||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 160853 GACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTT 160912 || || || ||||| || |||| ||||| || || ||||| || | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTTT 713 Query 160913 TAAT 160916 |||| Sbjct 712 TAAT 709 >seq16913 Length=117496 Score = 286 bits (316), Expect = 4e-72 Identities = 531/775 (69%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 158498 ||||| | || | || | ||||| | || || |||||||| |||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 158499 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 158558 || || || || || || || ||||| || || || |||| | | ||| | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 158559 ATCATCTCTGGTGCAGTTGTACCATC-----------TTCCAAC-------GCAATTGGT 158600 || || |||||||| || | || | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 158601 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 158660 | || || || || || ||| || | ||||| ||||||| ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 158661 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 158720 |||| | || | || | | || | | || | | |||||||| ||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 158721 TGGG-AACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACC 158779 |||| ||||| | ||| | |||| |||||| ||||| | | |||||||| || || Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 158780 AGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGA 158839 | || || || |||||| ||| | || || || | |||||||| ||||||||| Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 158840 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158899 || | ||||| | || || ||||||| ||| |||| || |||||||||| | ||| || Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 158900 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158959 ||||||||||||||| | || || ||| | ||| | ||||| |||||||| || || Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC--- 94627 Query 158960 TTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAA 159018 |||| | ||||||||| | | || | || | | || | ||||| ||||||| Sbjct 94626 TTTCAGCGTTATGCATGGTTCCTTGGCAACCT-CTAGTTTGATCAGGGAAACCACTGAAA 94568 Query 159019 CAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCG 159078 ||||| || | |||||||| || || ||||||||||| |||| ||||||||| | Sbjct 94567 ATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGG 94508 Query 159079 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTC 159133 | || || ||||| || ||||| || ||||| ||||| ||| | ||||||||||| Sbjct 94507 CTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 172 bits (190), Expect = 6e-38 Identities = 335/492 (68%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTT-TCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| || || | || || ||||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||| |||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | || ||| | | || | | ||||||| ||||| ||||||||| | || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||||| ||||| ||| |||||||| || || || || | || |||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 | | ||| | | || ||| | ||||||| ||| || |||| ||||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 158858 CTCTGGTACTTT 158869 ||||||||||| Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 123 bits (136), Expect = 3e-23 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| ||||| ||||| | ||||| ||||| || ||||| ||| |||| Sbjct 152516 GAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTTGGTGTTGC- 152458 Query 160637 TTTTCT-AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTG 160695 |||||| || || | ||| | ||||| || ||||| ||||| || || | ||| | || Sbjct 152457 TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACCGGTTTATG 152398 Query 160696 GACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAG 160755 || ||||||| | |||| || ||| | || || ||||||| || ||| | Sbjct 152397 GATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGACTTCATTTC 152338 Query 160756 TCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACAT 160812 || || || ||||| |||||||| ||||||||||| ||||| |||| || || Sbjct 152337 CCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAAAATAT 152281 >seq12572 Length=34890 Score = 120 bits (132), Expect = 3e-22 Identities = 352/535 (66%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||||||||| || ||||| || || | || |||| ||||||| | | Sbjct 27221 GGGACCGTTTCGTTTTTTTTTTTTGGTCCGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 27162 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 || || |||| |||| || || ||||| | ||| |||||||| | | | Sbjct 27161 CTTTTTTTTTTTGGTTTACAGGGACTACTTTTGTAACTTCTTGGTATACTTTTTTTTTGG 27102 Query 160047 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGA 160104 ||||||||||| | || ||| |||| ||||||| | | | || |||||| || | Sbjct 27101 CTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGTTTTTTTTTCCACTCCTGCCAA 27044 Query 160105 CGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAG 160164 | | | || ||| | | || | | || || || || |||||||| | Sbjct 27043 TAGTTTAGCACACTCTTTGTTACTATTTTTTTTCCCGGAAGCACAGGGGGATTTTACTCG 26984 Query 160165 GTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAAT 160224 ||| ||| || | |||| |||||| || |||||||| || || || ||||| Sbjct 26983 TTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAAT 26924 Query 160225 TGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATG 160283 | || ||| | ||||| |||||||| || || ||| || | | | || |||| Sbjct 26923 TTTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATG 26865 Query 160284 CTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGG 160343 | ||| | ||||||||||| | ||||| ||||| | ||||| || || ||| ||| Sbjct 26864 CAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGG 26805 Query 160344 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGAT---TCC 160400 | || || ||||||| || | | | ||||| || ||||| || ||| ||| ||| Sbjct 26804 GACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCC 26745 Query 160401 TGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGG 160455 | || ||| || ||||| || ||||| | ||||| || ||||||||||| Sbjct 26744 TTTTCTTCTTT---TTTTTTCATAATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| | ||||| ||||| || | |||||||| || | |||||||||| || Sbjct 318 GAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACC 376 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 |||||||| || || || |||| ||| || ||||| || ||||||||||| || ||| Sbjct 377 TATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTC 436 Query 159126 AACAACTCCCGTTCCTTGCACT 159147 |||||||| ||||| || |||| Sbjct 437 AACAACTCTCGTTCTTTACACT 458 >seq12503 Length=143431 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | |||| |||||||||||| | || | ||| || Sbjct 88079 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGC 88138 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||||||| | ||| | || |||||| ||| || || ||||| Sbjct 88139 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTT 88198 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCT-ATCTT 160060 ||| ||||||||||||||| | |||||||||| ||||| Sbjct 88199 ATAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 88241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552353188378880