Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq16913 291 1e-73 seq10113 250 3e-61 seq12982 187 3e-42 seq12572 141 1e-28 seq666 136 5e-27 seq8160 86.0 8e-12 >seq16913 Length=117496 Score = 291 bits (322), Expect = 1e-73 Identities = 540/786 (69%), Gaps = 26/786 (3%) Strand=Plus/Minus Query 178851 GTGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTT 178910 ||||| || |||||| | ||| |||| |||| | || ||| | || | || ||||| Sbjct 95231 GTGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTT 95172 Query 178911 CGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGT 178970 |||||| ||||||| | ||| || | | |||||| | || || | || ||| | Sbjct 95171 CGGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCAT 95112 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 || || ||||| || |||||||| || || ||||| || || || |||| | | || Sbjct 95111 CGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTA 95052 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCA--AG---------TTCAAAC------ 179073 | ||||||| || || ||||||||| || | || || ||| || Sbjct 95051 TAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGT 94992 Query 179074 -GCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTA 179132 ||||| || | || || ||||| || ||| || | ||||| | ||||| ||| | || Sbjct 94991 GGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATA 94932 Query 179133 TAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATAT 179192 || ||||||||| | || | || | | || | | || | | ||||| Sbjct 94931 AAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATAT 94872 Query 179193 GGGACGTGAGTGGG-AACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCAT 179251 ||| |||||||||| ||||| || |||||| |||| ||| || ||||| | |||||| Sbjct 94871 GGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCAT 94812 Query 179252 ACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTT 179311 | || || || | || ||||| ||||| || ||| | || || || | |||||||| Sbjct 94811 ATTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGA 94753 Query 179312 CTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCC 179371 |||||| |||| | ||||| | || || ||||||| ||| |||| || ||||||||| Sbjct 94752 GTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCC 94694 Query 179372 AAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCG 179431 | | ||| ||||||||||||||||| | || || ||| | ||| | ||||| ||||||| Sbjct 94693 AGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCG 94634 Query 179432 GTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAA 179490 | || ||| ||| | |||||| || | | || || | | ||| || | ||| Sbjct 94633 GCGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAA 94578 Query 179491 ACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTAT 179550 || ||||| | ||||| || | ||||| || || || |||||||||||||| | | Sbjct 94577 ACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGT 94518 Query 179551 AACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAAC 179610 || ||||| || || || || || || ||||| || ||||| |||||||| | || ||| Sbjct 94517 AATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAAC 94458 Query 179611 AACTCA 179616 |||||| Sbjct 94457 AACTCA 94452 >seq10113 Length=56568 Score = 250 bits (276), Expect = 3e-61 Identities = 491/715 (69%), Gaps = 11/715 (2%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||| | | | | |||| ||||| ||||| | |||||||| ||| | || Sbjct 48559 TGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCT 48500 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| |||| | || |||||| |||| || || ||||||| || || Sbjct 48499 TTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTT 48440 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 180208 |||| ||||| || | | | ||||||| | ||||| ||| | ||||||| | || || Sbjct 48439 GGTATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGC 48382 Query 180209 TGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 180268 || || |||||| | | | | || ||| | | ||||| ||||| | || Sbjct 48381 GGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGA 48322 Query 180269 TCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 180328 |||||| |||| || || || ||| | || || || |||| ||| || |||||||| Sbjct 48321 ACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCA 48262 Query 180329 CGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCAC-GTCTTATTG 180387 || || || ||||| || || ||| |||| || ||||||| || | |||| | Sbjct 48261 TGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTCA 48202 Query 180388 GTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTT-GTCAGCGTA 180446 | | || ||||| ||||| ||| |||||||| |||| | | ||| ||| || ||| Sbjct 48201 AT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTA 48143 Query 180447 TTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCA 180506 || || | || ||| |||| || || ||| |||||||| | |||||| ||| | Sbjct 48142 TTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAA 48083 Query 180507 GCAATCTTTAGATTCCTACTCTTTCTTC--AGGGTTTCCACAACTGGACCCTCAACCCCT 180564 | || ||| |||| | || ||||||| ||| ||||| || ||||| | ||||| | Sbjct 48082 GTTATATTTCAATTCATCCT-TTTCTTCCAAGGATTTCCT-AATTGGACGTTAAACCCAT 48025 Query 180565 TCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCG 180624 | ||||||||||| ||||| || || |||| | ||| |||||| | |||||||| | Sbjct 48024 TTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGG 47965 Query 180625 TAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTG 180684 || | || ||||| || | |||||| || ||||| ||||| | || | | Sbjct 47964 CTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTA 47905 Query 180685 ATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTC 180739 | |||| |||| || |||||||| || ||| ||||| | ||| |||| ||||| Sbjct 47904 ACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 150 bits (166), Expect = 2e-31 Identities = 214/299 (72%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 180735 TGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 180794 ||||| || || || ||| || | ||||| || || || ||| | ||||| || ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 180795 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAAC 180854 |||| | ||| || || ||| || | |||||||| | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 180855 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 180914 || |||| || |||||| | || | ||| | ||||||||||||||||| || ||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 180915 ACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCC 180974 || ||||||||||| | || || || ||||| || | | ||| ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 180975 GATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGCATT 181033 ||||| || || ||||| | || |||||||| || ||||||||| | || | ||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTTT 714 >seq12982 Length=32303 Score = 187 bits (206), Expect = 3e-42 Identities = 338/492 (69%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | | | |||| |||| | | ||| | || | || ||||| ||||| || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGTT-TCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| || || | || | | ||| | || || || Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | || |||||||||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || |||||||||||| || | || | || | || || | || || ||||| || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||| |||| ||||| | ||||| ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | || ||| | | || | | ||||||| ||||| ||||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| |||||||| | ||||| ||||||||| || || || || || | ||| | ||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 | ||| | | || ||| | ||||||| ||| ||||||| ||||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 179340 CTCTGGTACTTT 179351 ||||||||||| Sbjct 952 ATCTGGTACTTT 963 >seq12572 Length=34890 Score = 141 bits (156), Expect = 1e-28 Identities = 195/270 (72%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 180309 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTT 180368 |||| ||| || |||||||| || || || || |||||| |||||| |||| || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 180369 GAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATC 180428 ||||| || || | || | | || ||||| ||| ||||||||||||| || Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTC 26842 Query 180429 GCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCT 180488 ||||| ||||| | || || || || |||||||| || || |||||||||||| | Sbjct 26841 GCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTT 26782 Query 180489 CCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTC-CACAA 180547 | |||||| |||||||| || ||| ||||| | || ||||||| ||| || || Sbjct 26781 TTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCT-TTTCTTCTTTTTTTTTCATAA 26723 Query 180548 CTGGACCCTCAACCCCTTCCATATGATGGG 180577 ||||| | ||||| || ||||||||||| Sbjct 26722 TTGGACATTAAACCCATTTCATATGATGGG 26693 >seq666 Length=229199 Score = 136 bits (150), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 180689 AACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 180748 ||| |||| || |||||||| || ||||| ||||| | ||||| ||||| || ||||| Sbjct 152526 AACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTT 152467 Query 180749 CGGTATTGCATTTTCT-AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180807 ||| |||| |||||| || || | ||| | ||||| || ||||| ||||| || || | Sbjct 152466 TGGTGTTGC-TTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCA 152408 Query 180808 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180867 ||| |||||| |||||||| | |||| || ||| | ||||| ||||||| | Sbjct 152407 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTG 152348 Query 180868 ATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCA 180927 | ||| | || || ||| ||||| ||||||||||| || ||||| ||||| ||| Sbjct 152347 ACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCA 152288 Query 180928 AGAACAT 180934 | || || Sbjct 152287 AAAATAT 152281 >seq8160 Length=957 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 179488 GAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACC 179547 ||||||| ||| | ||||| || | ||||| || || | |||||||||||||| Sbjct 318 GAAACAA-TGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACC 376 Query 179548 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 179607 ||||| || || || || |||| || || ||||| || |||||||||||| | || Sbjct 377 TATAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTC 436 Query 179608 AACAACTCACGCTCTTTGCACT 179629 |||||||| || ||||| |||| Sbjct 437 AACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610196578663680