Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq16195 98.7 1e-15 seq9737 98.7 1e-15 seq7477 95.1 2e-14 seq10755 93.3 6e-14 seq13858 89.7 7e-13 >seq16195 Length=15917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 244 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 185 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || |||||||| ||||||||||| ||||| ||| ||| | || | |||| Sbjct 184 GCCCGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGGC-GCAGAAGGAGCCCAAGAAGA 126 Query 39735 AGATGCCTTCTAC 39747 ||||||| ||||| Sbjct 125 AGATGCCCTCTAC 113 >seq9737 Length=173456 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | |||||| |||| ||| || Sbjct 49271 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCC 49330 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||| | ||||||||||| ||| ||||| || | || |||||||| || || Sbjct 49331 GTTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATATTGTGGATTGA 49390 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC---AATGTGTCATA 69926 | ||| |||||||| || ||| || | |||||| || | | || ||||| Sbjct 49391 GACACCAATTCCTCCAGCAGATTTGCTTATCACAGCACA---TTCCGAGAGAGTATCATA 49447 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| || ||||||||| ||||| | ||| ||||||||| Sbjct 49448 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 49493 >seq7477 Length=85115 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| |||| | ||||| || | ||| ||| Sbjct 75789 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATAGGTACAATTCCA 75730 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| ||||| || | || |||||||| || || Sbjct 75729 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 75670 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 75669 ACGCCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAAATT 75610 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || |||||| ||||| | ||| ||||||||| Sbjct 75609 CCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAGCTA 75568 >seq10755 Length=49669 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || |||||||||||||| | || | ||| | || || ||||| Sbjct 35879 GCAGGCGAAGTCGCAGTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAAGGTGAG 35820 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || |||| || | ||||| |||||||| || ||||| ||||||| | || || |||| Sbjct 35819 GCCCAGCATGAGGCTGCGCTTCTTGAGCCAGAAGATGGC-GCAAAAGGAGCCCGAGAAGA 35761 Query 39735 AGATGCCTTCTAC 39747 ||||||| ||||| Sbjct 35760 AGATGCCCTCTAC 35748 >seq13858 Length=133588 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 60054 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 60113 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 60114 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 60172 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 60173 AGATGCCCTCGAC 60185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686759088227040