Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12004 100 2e-16 seq12070 91.5 1e-13 seq11548 89.7 4e-13 >seq12004 Length=146743 Score = 100 bits (110), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| ||||| |||||||| ||| | || ||| | || || ||||| || || Sbjct 145367 GTGGACTCTTTCTGAATGTTGTAGTCAGCTAAGGT-GCGACCATCCTCAAGCTGCTTCCC 145309 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || ||||| || | ||||| || || ||||| || Sbjct 145308 CGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGAATCTTCGCCTT 145249 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||||| || ||||| ||||| || || | || || |||| || Sbjct 145248 CACATTGTCGATTGTGTCTGAGGACTCAACCTCTAGTGTGATGGTCTTTCCAGTCAAGGT 145189 Query 27230 TTTCACAAAGATTTGCATAGCT 27251 ||||||||||| |||||| || Sbjct 145188 CTTCACAAAGATCTGCATACCT 145167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || || | |||| |||| ||| | |||||| || || || || |||||||| Sbjct 145854 GCCACCACGGAGGCGCAGGACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCCGC 145795 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| | || || ||||| ||||| || | ||||| ||||| || || || || Sbjct 145794 CAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGG 145735 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| |||| | | || | ||||| | | || || Sbjct 145734 GATGCCCTCCTTGTCTTGGATCTTCGCCTTCACGTTGTCAATGGTGTCAGACGACTCGAC 145675 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || ||||||||||| ||||| Sbjct 145674 CTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 145627 >seq12070 Length=146516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| || | |||| | || || ||||| || || Sbjct 65022 GTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 65081 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| ||||| |||||| ||| Sbjct 65082 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTC 65141 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || | ||| || | ||||| || ||||| Sbjct 65142 ACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAAGTGATGGTCTTGCCAGTAAGAGTC 65201 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 65202 TTCACGAAGATCTGCATA 65219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || || Sbjct 65926 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 65985 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| ||| Sbjct 65986 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 66045 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 66046 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTC 66105 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTA 27263 ||||| ||||| ||||| |||| ||| ||||| Sbjct 66106 TTCACGAAGATCTGCAT--CTGC-AAACATTTA 66135 >seq11548 Length=265335 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| | || || ||||| || ||| Sbjct 39768 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 39709 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || ||||| || | ||||| || || ||| ||| ||| Sbjct 39708 GCAAATATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTC 39649 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || ||||| || | ||||| |||| || Sbjct 39648 ACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTC 39589 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 39588 TTCACAAAGATCTGCAT 39572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424844100908832