Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq277 123 3e-23 seq13858 116 5e-21 seq9779 105 8e-18 seq7477 86.0 8e-12 seq9737 82.4 1e-10 >seq277 Length=113603 Score = 123 bits (136), Expect = 3e-23 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| || | | || ||||| || || || |||||||| || | || Sbjct 22507 AAGCCATCCATCTCAGTCAAGAGCTGGTTAATAGTCTGCTCCCTCTCATCGTTACC--GC 22450 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | || |||| || ||| | || || |||||||||||||||||||||||||| | Sbjct 22449 CACCGAGTCCGGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATGC 22390 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || ||||| ||||| ||||| |||||| ||||| | Sbjct 22389 AGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACACCGA 22330 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | ||| || || | | |||| ||| || |||||| || | || || | Sbjct 22329 CGAAGAGCTCGACGAACTCGGACGCAGCGCAGGAGAAGAATGGCACCCCGGCCTCCCCGG 22270 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 ||| ||| || ||||| ||||| || || || || ||| || |||| || || Sbjct 22269 CGACGGCACGCGCGAGCAGGGTTTTGCCTGTCCCAGGCGGGCCGACGAGGAGACAACCCT 22210 Query 11838 GGGGGATCTTGGCACC 11853 ||||||||||||||| Sbjct 22209 TGGGGATCTTGGCACC 22194 >seq13858 Length=133588 Score = 116 bits (128), Expect = 5e-21 Identities = 308/457 (67%), Gaps = 20/457 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || |||||||| ||||||||||||||||| |||||||| | || ||| ||||| Sbjct 59770 TACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCATC 59829 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| ||||| || ||||| | || | ||| || | | | ||| || || Sbjct 59830 CAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAGCGCCAT-GAGCAGGCG 59888 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| | | |||||| |||| ||| | || Sbjct 59889 GTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGAC 59948 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | ||| || || || || || ||||| || Sbjct 59949 C-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 60007 Query 122609 GGATAGTTTCGGTAGTGGGTCTA--TT---ACGCA--AAGTCTT-GAAGAGCTCCACGGC 122660 ||| |||| | | || | || ||| | | ||| | || ||| || ||| Sbjct 60008 GGACG----CGGTCCTCG-TCGAGCTTGCCACGGAGGAGGTCGTAGAGGAGG--CA-GGC 60059 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 || || |||||| ||||| || ||||| || || || || |||||| || || || Sbjct 60060 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 60119 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 |||||| || |||||||| | ||| | || |||||||| || || ||||||||||| || Sbjct 60120 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 60179 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||| || || || || || | ||||| ||||||||| Sbjct 60180 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 60216 >seq9779 Length=60839 Score = 105 bits (116), Expect = 8e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | || ||| | ||| || | || |||||||| ||| Sbjct 14083 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCACGGTTAGTGGCAGCA 14142 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || | | || || | Sbjct 14143 ATAACAATAACTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGA 14202 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || ||||| || ||||||||| | | ||| | || | |||| | || || ||| Sbjct 14203 GTCTGTTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 14262 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | || ||||| Sbjct 14263 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 14322 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| | ||||| ||||||||||||||||||||||| Sbjct 14323 CGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAA 14363 >seq7477 Length=85115 Score = 86.0 bits (94), Expect = 8e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| ||||||||||| || || |||| || || | ||| | || Sbjct 75478 TGGGGCCTCGGTGTGCCAGCATTGAAAAGCGTCGGTGAGGCATGTGTAAACCAGCGCTGA 75419 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| || ||| |||| | | |||| |||||||||||| ||| || || | || Sbjct 75418 GACATGAGGTGGTACGTCTTGATGGCAGACTCAATGTCTTCCTTGTGTATCCCCACTGAA 75359 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| | ||||| |||||| |||| | | | || | ||| || |||| | Sbjct 75358 ACCCTCATTAGCATGTGCTGTGGTCTTTCAACAACCTTTCCCCCAAGC--TTCAAGAGGT 75301 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | |||| || || |||| |||||||| || ||||| |||||| Sbjct 75300 AAGACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCAAAGTCCC 75253 >seq9737 Length=173456 Score = 82.4 bits (90), Expect = 1e-10 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || ||||||||||| ||||| || | || ||| ||||| | || Sbjct 49588 CTGGGGCCTTGGAGTGCCAGCATTGAAAAGGGTCGGGGAAGCATGAGTGAACCAGCGCTG 49647 Query 112000 GGACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||| ||| ||||| ||| || |||| ||||| || ||| || ||||| | | Sbjct 49648 AGACATCATGTGGTATGTTCTGACAG-CAGATTCAATATCATCCTTATGTATGCCAACAG 49706 Query 112059 CGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AG 112116 || | ||| ||||| | |||||| |||||| || | ||| | | | || | || Sbjct 49707 AAACTCTCATCAACATATGCTGTGGCCTTTCCACGACCTTTCCACCAA--CTTTCAACAG 49764 Query 112117 ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCA 112153 ||| | ||||||| || || | |||||| ||| || Sbjct 49765 ATAAGACCTCTCAAGTGTCTTAAAACCAAAATAATCA 49801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627895120425600