Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13858 150 2e-31 seq8302 120 4e-22 seq277 100 4e-16 seq16195 98.7 1e-15 seq10755 95.1 1e-14 seq9779 93.3 5e-14 >seq13858 Length=133588 Score = 150 bits (166), Expect = 2e-31 Identities = 314/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| || |||||||| ||||||||||||||||| | || ||| |||||| Sbjct 59770 TACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCATC 59829 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTG-CTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| | ||| | || || ||| || | | |||| || || Sbjct 59830 CAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAG-CCGAGCGCCATGAGCAGGCG 59888 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | ||| |||| ||||||| ||| | || |||||| |||| ||| | || Sbjct 59889 GTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGAC 59948 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 59949 C-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 60007 Query 129966 GAATG--GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| ||| | || | | || | | ||| | || ||| || ||| || Sbjct 60008 GGACGCGGTCCTCGT-CGAGCT-TGCCACGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 60062 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 60063 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 60122 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 60123 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 60182 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 60183 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 60216 >seq8302 Length=151315 Score = 120 bits (132), Expect = 4e-22 Identities = 373/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 13865 GTGATC-GTTCCGTCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGC 13923 |||||| | ||| | |||| ||| | ||| ||||||| ||| || | |||||| || Sbjct 103634 GTGATCCGGTCCTT-GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTTGC 103576 Query 13924 CAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTC 13983 | |||||| || ||| || | ||| || | || | | || ||| ||| ||| Sbjct 103575 GAGGTCGGCGCCGCTGAACCCGGGCGTGCGCATGGCCACGACGCTGAGCGACACGTCGGG 103516 Query 13984 AGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGG 14042 ||| |||||||| | | || ||| || | | |||| ||| || |||||||| || Sbjct 103515 GTCCAGCTTCTTGT-TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCGG 103457 Query 14043 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 14102 | || ||| ||| || || || ||||| || |||||||| || ||| |||| |||| Sbjct 103456 GGAGCCCGACGCTGACCTGGCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGA 103397 Query 14103 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 14162 | || |||||| || || |||||||| | || ||| | ||| || || |||| Sbjct 103396 TCTCCGGGCGGTTGGTGGCGGCGATGACGATGACGCCGCTGTCGCCGCTGAACCCGTCCA 103337 Query 14163 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCC 14221 |||| |||| || || || | || || || | || || || | | || | ||| Sbjct 103336 TCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCCCTCTCGTCGTTGCCCCCGCCGATG-CCC 103278 Query 14222 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTT 14281 | | ||| || ||||||||||| || || |||||||| |||| || || || Sbjct 103277 GTGCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTG 103218 Query 14282 TCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCC 14341 | ||| | |||| || ||||| | | || || || || || |||||||| Sbjct 103217 GCCTTGGCCTTGTTGAAGAGGTCACGCACCCGCGACGCGCCCACGCCGACGAACATCTCG 103158 Query 14342 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCG 14400 | || | || | || || | || |||||| ||| | || ||||||||||| Sbjct 103157 ATGAACTCGGACCCCGA-CAGCGAGAAGAAGGGCACGCCGGCCTCCCCCGCGATGGCCTT 103099 Query 14401 GGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||||||||||||| || Sbjct 103098 CGCCAGCAGCGTCTTCCCCGTCCCCGG 103072 >seq277 Length=113603 Score = 100 bits (110), Expect = 4e-16 Identities = 267/406 (66%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 ||||| || | ||||| || || || || ||| || | |||| | ||| || || Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 |||| |||| || || | | | | | ||||||||||||||||||||||| || || Sbjct 22537 GCGAGCACAATGACACCACTGTTGCCAGCGAAGCCATCCATCTCAGTCAAGAGCTGGTTA 22478 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGA 14240 || || || || | ||||| || | || | | || |||| || ||| | |||| Sbjct 22477 ATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCCGA 22420 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGA 14300 | || ||||| ||||| ||||| || || || || || | ||| || |||| Sbjct 22419 CAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGA 22360 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 14360 || ||||| || |||||||||||| || || | ||| || || | || || | | Sbjct 22359 GGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCGGACGCAGCGC 22300 Query 14361 ATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 14420 | || ||| || || | || || |||| ||| || ||||| ||||| || || | Sbjct 22299 AGGAGAAGAATGGCACCCCGGCCTCCCCGGCGACGGCACGCGCGAGCAGGGTTTTGCCTG 22240 Query 14421 TCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 |||| || || |||| || ||| |||||| ||||||| Sbjct 22239 TCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCACC 22194 >seq16195 Length=15917 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 229 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 170 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | ||| || || || || || ||||| |||||||||| ||||| || Sbjct 169 ACGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAGCCCAAGAAGAAGATGCCCTCTAC 113 >seq10755 Length=49669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || ||||| || ||||||||||| || | |||||| || || ||||||| | Sbjct 35864 GTGTAGGCCCTCATCGCGGGAGATGAGCTCGATGGAGAAGGTGAGGCCCAGCATGAGGCT 35805 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | |||||| || || ||||| ||||| ||||||||||| ||||| || Sbjct 35804 GCGCTTCTTGAGCCAGAAGATGGCGCAAAAGGAGCCCGAGAAGAAGATGCCCTCTAC 35748 >seq9779 Length=60839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||||||||| || || |||| || ||||| | ||||||||| || Sbjct 14167 TCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGAGTCTGTTCCCTTTCATCATTTCCA 14226 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | || | |||| | || || || ||||||||||| | || || || Sbjct 14227 CCACCAATACCTGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATG 14286 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| | | || | ||| ||| | ||| || |||| ||||| ||||| Sbjct 14287 CAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGGGAAGCACCAACACC 14345 Query 14329 CACAAACATCTCCACAAA 14346 ||||||||||||||||| Sbjct 14346 AACAAACATCTCCACAAA 14363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618300412048160