Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13858 150 2e-31 seq9779 132 6e-26 seq16195 125 8e-24 seq10755 104 3e-17 seq277 95.1 1e-14 seq9737 86.0 7e-12 seq8389 86.0 7e-12 >seq13858 Length=133588 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 60216 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 60157 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 60156 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 60097 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 60096 GCTCATCTCCCGCGACGAGGGCCTCCAC 60069 >seq9779 Length=60839 Score = 132 bits (146), Expect = 6e-26 Identities = 251/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || ||| | ||| ||| | || || || || || Sbjct 14083 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCACGGTTAGTGGCAGCA 14142 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| || || || | ||||||||||||||||| ||||| || ||||| | | Sbjct 14143 ATAACAATAACTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGGTTGAGA 14202 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9706 || ||||||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 14203 GTCTGTTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 14262 Query 9707 TCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATC 9765 ||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||||| Sbjct 14263 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 14321 Query 9766 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9825 || || || || || ||||||||||||||||||||||| | | | | ||| |||| Sbjct 14322 ACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCAGAA-ATTG 14380 Query 9826 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9884 || || || ||| || || || ||||| || ||| || | ||| ||||| || | Sbjct 14381 AGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTTC 14440 Query 9885 CTGG 9888 | || Sbjct 14441 CAGG 14444 >seq16195 Length=15917 Score = 125 bits (138), Expect = 8e-24 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| |||||||||| || ||||||||||| || | ||||||||||||||| || Sbjct 113 GTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGCGCCATCTTTTGGCTCAAGAAGCGTGGC 172 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || ||| ||||||||||||||| ||||| || |||||||| || ||| Sbjct 173 CTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCAC 229 >seq10755 Length=49669 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || ||||| ||||| || | |||||||||||||| | Sbjct 35748 GTAGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCAGC 35807 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||| || ||| |||||||| |||||| ||||| || || ||||| || ||| Sbjct 35808 CTCATGCTGGGCCTCACCTTCTCCATCGAGCTCATCTCCCGCGATGAGGGCCTACAC 35864 >seq277 Length=113603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | |||||||| || || || || || | |||| | || || ||| Sbjct 22597 CGATCGAACCTCCCTGGACGCAGAAGAGCCGAGTCCAGCACATCAGGCCTGTTGGTAGCG 22538 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | | | || ||||||||||| ||||| || |||| Sbjct 22537 GCGAGCACAATGACACCACTGTTGCC--AGCGAAGCCATCCATCTCAGTCAAGAGCTGGT 22480 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 ||||||| || |||| ||||| || | || | | || |||| || ||| | || Sbjct 22479 TAATAGTCTGCTCCCTCTCATCGTTACC--GCCACCGAGTCCGGCACCACGCTGCCTCCC 22422 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 || ||||||||||||||||||||||| ||||| || Sbjct 22421 GACAGCATCAATCTCATCAATGAAGACAATGCAGGG 22386 >seq9737 Length=173456 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACG 104196 |||| | | ||| || |||||||||| | || || ||||||| | ||||| | || | Sbjct 49814 GAGATTTCAACTATGATTATTTTGGTTTTAAGACACTTGAGAGGTCTTATCTGTTGAAAG 49755 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | | ||| | |||||| |||||| | ||||| ||| | || | | || || Sbjct 49754 --TTGGTGGAAAGGTCGTGGAAAGGCCACAGCATATGTTGATGAGAGTTTCTGTTGGCAT 49697 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGT 104315 ||| ||| || ||||| |||| || ||| ||||| ||| |||||| || | || Sbjct 49696 ACATAAGGATGATATTGAATCTG-CTGTCAGAACATACCACATGATGTCTCAGCGCTGGT 49638 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 ||| ||| || | || ||||| ||||||||||| || ||||| ||||| Sbjct 49637 TCACTCATGCTTCCCCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCA 49589 >seq8389 Length=83750 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 80343 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 80402 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 |||||| || | |||||||||||||| || Sbjct 80403 CTGCGCCATCTTCTGGCTCAAGAAGCGCGG 80432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583133678308640