Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq13858 214 2e-50 seq16195 131 2e-25 seq8389 118 1e-21 seq10755 113 5e-20 >seq13858 Length=133588 Score = 214 bits (236), Expect = 2e-50 Identities = 585/876 (67%), Gaps = 35/876 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || |||||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 60629 TTCCCGATACGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 60570 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 ||| ||||||| | |||||| | | ||| | | ||||| | ||| | Sbjct 60569 ACCGCCGAGGAGGTGGACCTCTCGGCCGACGCGCGCCACTGGGATTCGGCGCTCTCCCCC 60510 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 60509 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 60450 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| || || ||| | |||||||| || | Sbjct 60449 CTCGAGAACCTCGCCTCCCGCTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGCGCC 60393 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||| | | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 60392 TTCTATGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 60334 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 || | || || || | ||||||| | || ||||| ||||| || || Sbjct 60333 GGAGACGTACATCCGCGACGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 60274 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || ||||| |||| ||||| || | | ||||| Sbjct 60273 CCCCGCCGTCCGCCGCAAGGCCGACTGGGCGATGCGCTGGATCGACGGCGGGGAGCGC-- 60216 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 60215 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 60156 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 60155 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 60096 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| |||||||||||||| || || || || | ||||| | ||| Sbjct 60095 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCT 60037 Query 60152 -ATTGGAAAAATGCCCTTCCAAGGA---TATTCACAAGATTGT-TCAGTGGGCTTGTGAA 60206 ||| || || | | |||| | | | |||| || | | | | | || Sbjct 60036 CCGTGGCAA---GCTC-GACGAGGACCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGAC 59982 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGA 60266 | ||| |||||||| || || ||||| || | ||| | || ||| ||| || Sbjct 59981 ATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCGGTCGCGCTCGTCGGCATGAACGGCGGG 59922 Query 60267 GAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGC-CCAGTTTGGAGA 60322 |||| |||||||| |||| || || |||||| |||||||| | | || | Sbjct 59921 CTCATGAGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTCATGGCGCTCGGCTGCAAG 59862 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 ||| || ||| || ||||| ||||||||||||||| ||||||| || | || Sbjct 59861 AGG----ATGTACAACGCCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGG 59806 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| ||||||||||||||||| |||||||| || Sbjct 59805 GAAGACAAACTTCTTTGAGAAGCGCGTCGGGGAGTA 59770 >seq16195 Length=15917 Score = 131 bits (144), Expect = 2e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || || |||||||||| ||||| ||||| || || || |||||||| |||||||| Sbjct 112 CGTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGCGCCATCTTTTGGCTCAAGAAGCGTGG 171 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||||||||| | |||||||||||||| || ||||| ||||||||||| || Sbjct 172 CCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCA 228 >seq8389 Length=83750 Score = 118 bits (130), Expect = 1e-21 Identities = 339/511 (66%), Gaps = 19/511 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || || | |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 79930 TTCCCGATCCGCTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 79989 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGAC--CTGAAGGATTGGGACAAG---CTCAATT 59676 | | ||||||| | |||||| |||| ||| | || | |||||| || ||| Sbjct 79990 ACGGCCGAGGAGGTGGACCTCTCCGGCGACGCCCGAC--ACTGGGACGAGGTGCTCTCCC 80047 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 |||||||| || ||| || || || ||||||||||| || || || || | Sbjct 80048 CCGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 80107 Query 59737 TGATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGT 59793 || | || || | | | ||| ||| || || ||| | ||||||||||| Sbjct 80108 TGCTCGAGAACCTGGCCTCCCGCTTCATGTCC---GACGTGCAGGTCGCCGAGGCCCGCG 80164 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || Sbjct 80165 CCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTG 80223 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 |||| | | || || | ||||||| | |||||||| ||||| || || Sbjct 80224 CTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATCGACACT 80283 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCAT 59970 |||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 80284 GTCCCCGCCGTCCGGCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC 80343 Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 || || | || ||| | || || || ||||| || || ||||||||||| ||||| | Sbjct 80344 --TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 80401 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||| || || ||||||||||| ||||| || Sbjct 80402 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 80432 >seq10755 Length=49669 Score = 113 bits (124), Expect = 5e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || || ||||||||||| ||||| || || || || ||||||||||| ||||| | Sbjct 35747 CGTAGAGGGCATCTTCTTCTCGGGCTCCTTTTGCGCCATCTTCTGGCTCAAGAAGCGCAG 35806 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| |||||| | ||||||| |||||| || ||||| || |||||||| || Sbjct 35807 CCTCATGCTGGGCCTCACCTTCTCCATCGAGCTCATCTCCCGCGATGAGGGCCTACA 35863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548405249019840