Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13858 156 5e-33 seq8389 129 6e-25 seq11881 93.3 5e-14 seq3097 93.3 5e-14 seq9104 91.5 2e-13 seq13215 89.7 6e-13 seq6957 89.7 6e-13 seq6717 84.2 2e-11 seq5026 82.4 8e-11 >seq13858 Length=133588 Score = 156 bits (172), Expect = 5e-33 Identities = 492/750 (66%), Gaps = 18/750 (2%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| ||||| ||||| |||||||| | || ||||||| ||||||| Sbjct 59770 TACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCATC 59829 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| || ||| || ||| || | | |||||||| | Sbjct 59830 CAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAGC---GCCATGAGCAGG 59886 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | |||||||| |||| || | | |||||||| ||| | Sbjct 59887 CGGTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCG 59946 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 ||| || || ||| || ||||| | ||| | ||| || ||| |||| | Sbjct 59947 ACCGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 60006 Query 74700 TGAATGTCTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756 | | | | | | | || || | | ||| | ||| || | || ||| || Sbjct 60007 CGGACGCGGTCCTCGTCGAGC--TTGCCACGGAGGAGGTCGTAGAGGAGGCA-GGCGAAG 60063 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || || ||| || || | | || | || || || || | ||||| ||||| Sbjct 60064 TCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 60123 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 || || |||||||| | ||| |||||||| |||||||| || |||||||||||| ||| Sbjct 60124 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 60183 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGTC-ATCCAAGTCT 74934 || || || |||||||| ||||| | ||||| || | | | | ||| ||||| | Sbjct 60184 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCC--CCGCCGTCGATCCAGCGCA 60241 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994 ||||| || || || || ||| || ||||| || ||||| || ||||||||| Sbjct 60242 TCGCCCAGTCGGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGT 60301 Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 ||||||| || || || | | | || | || || |||||| ||||||| || | Sbjct 60302 CCTTCTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGA 60361 Query 75055 TCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 | |||| || ||| |||| | | ||||| | |||||||| || | ||| || || Sbjct 60362 TGTTCTCGATG-GCGATCTGGAAGCCATAGAAGGCGCGCGCCTCGGCGACCTGCACGTCG 60420 Query 75114 TTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCC 75173 || | ||| ||||| | ||||||||||| ||||||||||| || || Sbjct 60421 GACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCG 60480 Query 75174 AGTACCATTTTGATAAAGTGGCGCTCATCG 75203 || || ||| ||||||||||| ||| Sbjct 60481 AGCACGTGGGAGATGAAGTGGCGCTCGTCG 60510 >seq8389 Length=83750 Score = 129 bits (142), Expect = 6e-25 Identities = 322/479 (67%), Gaps = 15/479 (3%) Strand=Plus/Minus Query 74820 CCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACA 74879 || |||||||| | ||| |||||||| |||||||| || |||||||||||| ||||| Sbjct 80432 CCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACG 80373 Query 74880 CACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCAAGTCTGA 74936 || || |||||||| ||||| | ||||| | || ||| | ||| ||||| | Sbjct 80372 CAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCGTCGATCCAGCGCATG 80316 Query 74937 GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 ||||| || || || || ||| || |||||||| ||||| || |||| |||| || Sbjct 80315 GCCCAGTCGGCCTTGCGCCGGACGGCGGGGACAGTGTCGATGGCGCGGAACAGGCGGTCC 80256 Query 74997 TTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATC 75056 ||||| || || || | | || | || || |||||| ||||||| || || Sbjct 80255 TTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATG 80196 Query 75057 GACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT 75115 |||| || ||| |||| | ||||||| | || ||||| || | ||| || || Sbjct 80195 TTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGCACGTCGGA 80137 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 || | | | ||||| | ||||||||||| ||||||||||| || || || Sbjct 80136 CATGAAGCGGGAGGCCAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAG 80077 Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAATCCTTCAG--G 75230 || || ||||||||||| ||| | ||| | |||||| | || | | Sbjct 80076 CACGTGGGAGACGAAGTGGCGCTCGTCGGGGGAGAGCACCTCGTCCCAGT--GTCGGGCG 80019 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAA 75289 || || | | || | ||||||| |||||||||| | | | |||||| ||||| || Sbjct 80018 TCGCCGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTGTAGAA 79960 >seq11881 Length=260700 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 179190 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 179131 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 179130 TGAGCTACGAAAGCAA 179115 >seq3097 Length=103164 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 41810 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 41751 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 41750 TGAGCTACGAAAGCAA 41735 >seq9104 Length=307373 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 282233 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 282174 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 282173 TGAGCTACGAAAGCA 282159 >seq13215 Length=221169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 161388 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 161447 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 161448 TGAGCTACGAAAGC 161461 >seq6957 Length=90631 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 32232 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 32173 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 32172 TGAGCTACGAAAGC 32159 >seq6717 Length=91308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 60210 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 60151 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 60150 ACTGAGCTACGAGAGC 60135 >seq5026 Length=96704 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 34510 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34451 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 34450 TGAGCTATGAAAGCA 34436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547096734272800