Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12936 131 1e-25 seq11736 104 2e-17 seq12418 98.7 9e-16 seq8841 95.1 1e-14 seq8356 91.5 1e-13 seq15625 89.7 4e-13 seq2366 89.7 4e-13 seq12004 82.4 7e-11 >seq12936 Length=140512 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| |||| || ||||| ||||| | || Sbjct 39096 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 39037 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| ||| ||||| ||||| ||||| || || || || || Sbjct 39036 GACACGATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAG 38977 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| ||||| || | || ||| | || || | ||||||||| Sbjct 38976 CAACGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTTGCAGATTACAAC 38917 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||||| || | || | ||| | || || ||||| Sbjct 38916 ATTCAAAAGGAGTCCACCTTGCACCTTGTCCTCCGTCTACGTGGAGGCAT 38867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||| | || || || | || Sbjct 38640 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 38581 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 38580 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 38521 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||| || | || ||| | ||| | | ||||||||| Sbjct 38520 CAGCGCCTCATTTTTGCCGGCAAGCAGCTTGAGGACGGGCGTACCCTGGCGGATTACAAC 38461 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | ||| | || |||| | || ||||| Sbjct 38460 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGCCTTCGTGGTGG 38414 >seq11736 Length=148999 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || ||||| || || || || Sbjct 9776 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 9835 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || ||||| || ||||| || || || || Sbjct 9836 GACACTATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 9895 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| | || ||| | ||| | | || |||||| Sbjct 9896 CAGAGGCTCATCTTTGCTGGCAAGCAACTAGAGGACGGCCGCACCCTGGCTGACTACAAC 9955 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || | || ||||| || ||||||| || Sbjct 9956 ATTCAGAAGGAGTCTACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGTAT 10005 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || ||||||||| || Sbjct 10232 ATGCAGATCTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAAAGCTCT 10291 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || || || ||||| Sbjct 10292 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCTGATCAG 10351 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||| ||| | ||| | | ||||||||| Sbjct 10352 CAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGGCGTACCTTGGCAGATTACAAC 10411 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || || | ||| | || |||| | || |||||| Sbjct 10412 ATTCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCCTCCGCGGTGGC 10459 >seq12418 Length=36051 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| || || || || || || |||||| |||||||||||||||| || | || | Sbjct 33775 TGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATTACTCTTGAAGTCGAGTCCTCTG 33716 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | || || | || || || ||| | ||||| ||||| || || || || || | Sbjct 33715 ACACTATCGATAATGTAAAGGCGAAGATTTAGGACAAGGAAGGTATCCCTCCGGACCAGC 33656 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 |||| || || | ||| ||||| || | || || | ||| | | || ||||||| Sbjct 33655 AGCGGTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCTGACTACAACA 33596 Query 27169 TTCAAAAGGAGTCGACC 27185 |||| |||||||| ||| Sbjct 33595 TTCAGAAGGAGTCCACC 33579 >seq8841 Length=75027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 23659 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 23600 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || ||||| || || || || Sbjct 23599 GACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGACCAG 23540 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | |||| |||||| Sbjct 23539 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 23480 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 23479 ATCCAGAAGGAGTCGAC 23463 >seq8356 Length=84350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || ||||| ||||| | ||| Sbjct 46708 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACAATCACCCTTGAGGTGGAGTCATCC 46767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| ||||| || || || || || ||||| || || Sbjct 46768 GACACAATTGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGAATTCCACCAGAGCAG 46827 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | || | || ||||| || |||| || | || || | || |||||| Sbjct 46828 CAGCAGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACGATTGCTGACTACAAC 46887 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| || ||||| ||| Sbjct 46888 ATTCAGAAAGAGTCCACC 46905 >seq15625 Length=123999 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | Sbjct 106657 ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTGGAGGTGGAGAGCAGC 106716 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || |||||||| ||||| || || || || Sbjct 106717 GACACCATCGACAACGTCAAGGGCAAGATCCAGGACAAAGAGGGCATCCCGCCGGACCAG 106776 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | || | |||| |||||| Sbjct 106777 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCACACGCTCGCCGACTACAAC 106836 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||||||||| | || |||| |||| | || || |||| Sbjct 106837 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTCCGCGGCGGCA 106885 >seq2366 Length=105829 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || || || || ||||| | || Sbjct 75728 CATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATCACACTGGAGGTGGAGTCATC 75787 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || | || ||||| || ||||| || || || || Sbjct 75788 TGACACCATCGACAATGTGAAGGCCAA--TCCAGGACAAGGATGGCATCCC-CCGGACCA 75844 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 | ||| | || | | ||||||| || | || ||| | ||| || |||| ||||| Sbjct 75845 GCGGCGCCTCATCTTCACCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 75904 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||| ||| | ||| | ||| | || |||| ||||| Sbjct 75905 CATCCAAAAGGAGTCCACCCTCCATCTCGTTCTCCGCCTGCGCGGTGG 75952 >seq12004 Length=146743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || || || || || | || Sbjct 145171 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACACTAGAGGTTGAGTCCTCA 145230 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| || ||||| ||||| || || Sbjct 145231 GACACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 145290 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || || || ||| | | || |||||| Sbjct 145291 CAGCGTCTCATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACCTTAGCTGACTACAAC 145350 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| || ||||| ||| Sbjct 145351 ATTCAGAAAGAGTCCACC 145368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434823609534720