Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq16913 241 2e-58 seq12982 150 2e-31 seq8160 87.8 2e-12 >seq16913 Length=117496 Score = 241 bits (266), Expect = 2e-58 Identities = 467/683 (68%), Gaps = 26/683 (4%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 95128 TTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTT 95069 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCC-----AAGCT 176320 | | ||| |||| ||| ||||||| || || || || || | | || || || Sbjct 95068 TCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACT 95009 Query 176321 ------CAAAC-------GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACA 176367 | || ||||||||| | || || |||||||| ||| || | ||| | Sbjct 95008 ATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCT 94949 Query 176368 GTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATC 176427 ||||| |||||| | || ||| | || || | | || |||| | | || | | Sbjct 94948 GTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTT 94889 Query 176428 GGTATCTCAGCTTACATGGGACGCCAATGGG-AACTTAGTTACAGACTAGGCATGCGTCC 176486 ||| | | ||| ||||| || | |||| ||||||||| | | || || | ||| || Sbjct 94888 GGTGTAGCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCC 94829 Query 176487 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTA 176546 |||||| | ||||||| || || || | | || || | || |||||| | || || Sbjct 94828 TTGGATTGCTATTGCATATTCAGCTCCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTA 94770 Query 176547 -TCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCA 176605 || ||| |||||||| |||||| |||||| ||||| | || || || |||| |||| Sbjct 94769 CTCTATT-GGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCA 94712 Query 176606 ACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTG 176665 ||||||| |||||||||| | |||||||||||| || ||||| |||| || ||| | | Sbjct 94711 ACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAG 94652 Query 176666 GAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTT 176725 | |||| ||||| || || || || |||| | ||||| || | | || | Sbjct 94651 GTATAGCTGGTGTATTCGGCGGTTC---TTTCAGCGTTATGCATGGTTCCTTGGCAACCT 94595 Query 176726 CTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGAC 176785 || | | || || || || ||||| || || || | ||||||||||| || | Sbjct 94594 CTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTC 94535 Query 176786 AAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCC 176845 ||||||||||||||| || || || ||||| |||||||| |||||||| | ||||| | Sbjct 94534 AAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTC 94475 Query 176846 AGTATGCTTCTTTCAATAACTCA 176868 | |||||| ||||||| |||||| Sbjct 94474 AATATGCTACTTTCAACAACTCA 94452 >seq12982 Length=32303 Score = 150 bits (166), Expect = 2e-31 Identities = 267/387 (69%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 176218 TTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTA 176277 || || || || || || || ||||| || |||||||| || || || | || ||| || Sbjct 578 TTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTA 637 Query 176278 CTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG-CAATCGGACT 176336 | |||||||||| || ||||| || || | | || | || | | | |||||| | Sbjct 638 ATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTA-CTTATGTGACGATCGGATT 696 Query 176337 ACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACC 176396 || || |||||||| ||| |||| ||| | ||||| |||||| | |||||||| || || Sbjct 697 GCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCC 756 Query 176397 ATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATG 176456 || | || |||| | || ||| | | ||| | | ||| |||| || | || Sbjct 757 TTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTG 816 Query 176457 GGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGT 176516 ||||||||||| | || || ||||| | |||||| ||||||||| || || || || Sbjct 817 GGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGT 876 Query 176517 ATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGG 176576 | | || | || ||||| | | || || | ||||||| | ||| |||||||| Sbjct 877 TGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGG 936 Query 176577 TATGCCTCTTGGCATTTCAGGTACATT 176603 ||||||| | || || || ||||| || Sbjct 937 TATGCCTTTAGGAATATCTGGTACTTT 963 >seq8160 Length=957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||||||||| | ||||||||||||| || || ||||| ||||| || | ||| ||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 ||||| | |||||||| ||| || |||||| ||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTC 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603362868395520