Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq16913 241 2e-58 seq10113 143 3e-29 seq9386 138 1e-27 seq8434 100 4e-16 seq8160 89.7 6e-13 seq666 86.0 8e-12 >seq16913 Length=117496 Score = 241 bits (266), Expect = 2e-58 Identities = 463/677 (68%), Gaps = 32/677 (5%) Strand=Plus/Minus Query 189767 GCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCA 189826 || || || || || || || ||||| |||||||| || | ||||| ||| | |||| Sbjct 95119 GCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCT 95060 Query 189827 CTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATT--- 189883 | || ||| | ||||| || || ||||||||| || | ||| || || | |||| Sbjct 95059 TTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCT 95000 Query 189884 ---------------GGTCTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAG 189928 || | || || |||||||| ||| || | ||| | || ||||| Sbjct 94999 ACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAA 94940 Query 189929 TGGCTTTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATCT 189986 ||| | || ||| ||||||||| || | | | ||| | || ||| ||||| | Sbjct 94939 TGGTTATAAAATTGTGGTCCTTCTGAGCTAAT--TGTTCTATATTTTTTACTTGGTGTAG 94882 Query 189987 CAGCATACATGGGAAGACAGTGGG-AATTATCATACAGACTAGGTATGAGACCTTGGATC 190045 | || ||||| | |||||| || | | | | || |||| | | |||||||| Sbjct 94881 CTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATT 94822 Query 190046 TGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTT 190105 | |||| |||||||| || | | || || ||| || ||| | || ||| | || Sbjct 94821 GCTATTGCATATTCAGCTCCTTTG-CAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATT 94763 Query 190106 GGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATG 190165 ||||| || ||||| |||||| |||||||||| || || |||| |||||||| || Sbjct 94762 GGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATA 94704 Query 190166 TTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCA 190225 |||||||||| | ||| || || ||||||||||| |||| || ||| |||| |||| Sbjct 94703 ATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCT 94644 Query 190226 GGTATGTTTGGTGGAGCATTATTCTCTGCA--ATGCATGGTTCACTTGTAACATCTTCTC 190283 ||| | || || || || || || || ||||||||||| | | ||| ||| | Sbjct 94643 GGTGTATTCGGCGG----TTCTT-TCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTT 94589 Query 190284 TAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAG 190343 | ||||| ||||| |||| ||||| || | |||||||| ||||| ||||||| Sbjct 94588 TGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAG 94529 Query 190344 AAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATG 190403 |||| |||| || || || |||||||| ||||| |||||| || | ||||| || |||| Sbjct 94528 AAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATG 94469 Query 190404 CTTCATTCAACAACTCA 190420 || | |||||||||||| Sbjct 94468 CTACTTTCAACAACTCA 94452 >seq10113 Length=56568 Score = 143 bits (158), Expect = 3e-29 Identities = 485/748 (65%), Gaps = 36/748 (5%) Strand=Plus/Minus Query 190796 TTTGATGTGCTTGATGACTGGTTAAAACGTGATAGATTTGTATTCATAGGTTGGTCTGGT 190855 |||||| | | || |||| |||| | | || ||||| || || | |||||||| Sbjct 48569 TTTGATATTATGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGC 48510 Query 190856 CTTATATTATTACCATGTGCTTTCCTATCAATTGGTGGTTGGTTCACAGGAACTACATTT 190915 || | | || || ||||||| | | | || |||||||| ||||| ||||| ||| Sbjct 48509 CTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTT 48450 Query 190916 GTTACTAGTTGGTATACACATGGAATTGCATC-TTCATACCTTGAAGGAGCAAACTTTTT 190974 || ||| ||||||||| |||||| ||| || ||| || | |||||| || || || Sbjct 48449 GTAACTTCTTGGTATACCCATGGA-TTGGATAGTTCCTATTTGGAAGGATGCAATTTCTT 48391 Query 190975 GACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCATAGTTTATTATTCTTATGGGG 191034 ||||| || || ||| |||| | || | | | || ||| ||| | ||||||| Sbjct 48390 AACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGG 48331 Query 191035 TCCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGT 191094 | || | ||| || ||| |||||| | ||| | ||||| || |||| ||||| Sbjct 48330 CCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGT 48271 Query 191095 AGCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTTTGAAATTGCAGG 191154 || || ||||| | ||| || ||||| |||||||||||||| |||||| || | Sbjct 48270 CGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAA----CATG 48215 Query 191155 ATTGGTGGGT---ATT-AGACCTTACAATGCTCTTGCTTTTTCTGCTGTCATAGCA---G 191207 | || || ||| | ||||| ||||| || | || ||| ||| | || Sbjct 48214 CTCAGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCT--AGTCCAACCATTGT 48157 Query 191208 TTTTCACAAGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTT 191267 |||| ||||||| | | |||||| | || || ||| |||||||| | Sbjct 48156 TTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGA 48097 Query 191268 CATTTGGAGTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTA 191327 ||||| | | || || ||| || || || ||| | ||||| || | ||| | Sbjct 48096 GTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGA 48037 Query 191328 CACTCAACCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTG 191387 | | ||||| || || |||||||| ||||| || | |||| | ||| | ||||| Sbjct 48036 CGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCT 47977 Query 191388 CCATTCATGGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATG 191447 | || ||||| ||||| || | ||||| | ||| |||| || |||| Sbjct 47976 CTATCCATGGGGCTACCATAGAAAACAC--TCTAT------TCAAAGAT-------GATG 47932 Query 191448 GTCAAGTTCAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATT 191507 | || |||| ||||| || | | | |||| || | ||| |||||||||| Sbjct 47931 AT--GGTGCAAA----TACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATT 47878 Query 191508 CTATGATCACTGCAAACAGATTCTGGTC 191535 | ||||||||| | ||||| || ||||| Sbjct 47877 CAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 104 bits (114), Expect = 3e-17 Identities = 209/306 (68%), Gaps = 7/306 (2%) Strand=Plus/Minus Query 191531 TGGTCACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTG 191590 ||||| || ||||||||| || | || || || ||| | | |||| ||||| ||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 191591 TTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAAC 191650 |||| | |||||| | | | || | | || || | || | || || || ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 191651 TTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAA 191710 || | || |||||||| | | || | || | ||||||||||| || || ||||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 191711 ACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTC--TTCAG 191768 || ||||| || || | |||||| | ||||| ||||| || |||||| | |||| Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 191769 TAGACCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAAATGCAT 191828 || || |||||||| || || | ||||| ||||| |||||||| | |||| || | Sbjct 772 --GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCTT 715 Query 191829 TGTAAT 191834 | |||| Sbjct 714 TTTAAT 709 >seq9386 Length=66676 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 186818 ACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGTAATCACA 186877 || ||| | ||||| ||||| |||||| | || ||| || | | | | |||| Sbjct 27398 ACTTATTTGATGGGATGGTTAAGAGATAACCTATGGTTAAACTCTTCACAACTTATCAAT 27457 Query 186878 GGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGT 186937 || || | || ||||| ||||||| | | || |||||||| ||||||||||| ||||| Sbjct 27458 GGATATAATCCTTTTGGGATGAATAGTTTATCAGTATGGGCTTGGATGTTCTTATTTGGG 27517 Query 186938 CATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAG 186997 ||| | |||||||| || |||||||| || | ||||| ||| | || |||||||| || Sbjct 27518 CATCTTGTTTGGGCTACTGGATTTATATTTTTAATTTCCTGGCGTGGATATTGGCAGGAA 27577 Query 186998 TTAATTGAGACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATA 187048 |||||||||||| | || ||||| ||| || | || || | || ||| || Sbjct 27578 TTAATTGAGACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTA 27628 >seq8434 Length=82941 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 182590 AGCAAAGCAAATTGCTTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGA 182649 ||| ||||||||||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 39525 AGCCAAGCAAATTGCTTCCGCGCCGAGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGA 39584 Query 182650 AACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAG 182709 | | | || || ||||| ||||||||| | | ||||| || || | |||| || | Sbjct 39585 ATCTACCTGCCCAACAGATTTTTTAAGTGTACACGTTTATTTAGGGTCTAAAACAACCTG 39644 Query 182710 AAGCATGGGTCTAGCATATT 182729 |||||| |||| | |||| Sbjct 39645 CGGCATGGCTCTATCTTATT 39664 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381 |||||||| |||| |||||||||| || || || || || |||||||||| ||| ||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACT 190433 ||| || | |||||||| ||| || ||||||||||| | |||||||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq666 Length=229199 Score = 86.0 bits (94), Expect = 8e-12 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 191465 ACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAAC 191524 ||||| | || ||| | | ||| || | ||| ||||||||||| ||| | ||||| | Sbjct 152546 ACCTTCCGTGCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTAT 152487 Query 191525 AGATTCTGGTCACAGATATTTGGTATTGC-ATTCTCTAACAAAAGATTTCTACACTTCTT 191583 | || ||||| || || |||||| |||| ||||| || ||| | | |||| ||||| Sbjct 152486 CGCTTTTGGTCTCAAATCTTTGGTGTTGCTTTTCTC-AATAAAGGCTGGTTACATTTCTT 152428 Query 191584 GATGTTGTTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGC 191643 ||||| ||||| || || | || | |||| | || || | || || || || Sbjct 152427 TATGTTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGC 152368 Query 191644 ACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGA 191703 | ||| || | || | ||| || | || || || || ||||| ||||| || || Sbjct 152367 TTTGAACCTACGTGCTTGTGACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGA 152308 Query 191704 GTTTGAAACCTTCTATACTAAGAACATTCTT 191734 ||||| || |||||| | || || ||| || Sbjct 152307 ATTTGAGACTTTCTATGCCAAAAATATTTTT 152277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631289580441760