Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12004 113 4e-20 seq15625 111 1e-19 seq12320 107 2e-18 seq12880 102 7e-17 seq8841 98.7 9e-16 seq11548 96.9 3e-15 seq12936 91.5 1e-13 seq12418 86.0 5e-12 seq12070 84.2 2e-11 seq9352 82.4 7e-11 >seq12004 Length=146743 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || ||||| |||||||| || ||||| || |||| || Sbjct 145608 CACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGACCGTCCTC 145549 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||| | || | || ||| ||||| Sbjct 145548 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 145489 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | | | | ||||| ||||||||| |||| ||||| | || Sbjct 145488 GATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTGATGGTCTT 145429 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || |||||||| ||||| Sbjct 145428 TCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| || || || || || || || || || || || | || ||| Sbjct 145835 ACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCA 145776 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || ||||||||||| |||||| | || ||| ||||| Sbjct 145775 AGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGG-ATGCCCTCCTTGTCTTG 145717 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | ||| | | | || || |||||| || |||| |||||| | | Sbjct 145716 GATCTTCGCCTTCA-CGTTGTCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCT 145658 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||| ||||| Sbjct 145657 TCCCTGTCAGGGTCTTCACAAAGATCTGCAT 145627 >seq15625 Length=123999 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||||| || || | | Sbjct 106872 GCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGTGGCC 106813 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || |||||| Sbjct 106812 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCTTT 106753 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || ||||| |||||| |||| |||| Sbjct 106752 GTCCTGGATCTTGCCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGA 106694 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||||||||| || || ||||| |||||||| Sbjct 106693 TCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 106654 >seq12320 Length=36718 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||||| || || || || Sbjct 5364 GCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCTC 5305 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || ||||| || || || ||||||||||| | || | | ||| || Sbjct 5304 GTCCTCCAGCTGCTTCCCCGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTT 5245 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| | || || | | |||||||| || || |||||| |||| |||||| Sbjct 5244 GTCCTGCACCTTGGCCTTCACGTTTGCCACCGTGTCCGACGCCTCCACCTCCAGCGTGAT 5185 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| ||||| || || ||||| |||||||| Sbjct 5184 CGTCTTGCCCGTGAGCGTCTTCACGAAGATCTGCATCTT 5146 >seq12880 Length=140709 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || ||||| || || || | Sbjct 18822 GCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 18881 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 18882 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 18941 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||| | | | || ||| | | | || || |||||||| |||| ||||| Sbjct 18942 ATCC-TGAATCTTGGCTTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGA 19000 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | ||||||||||| || || || ||||| |||||||| Sbjct 19001 TGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 19040 >seq8841 Length=75027 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || ||||| ||| || || || || || ||||| Sbjct 23433 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 23492 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || ||||||||||| | || Sbjct 23493 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 23552 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| ||| || || | ||| | | | || || |||||||| Sbjct 23553 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 23611 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||| |||||| | || |||||||| || || || ||||| |||||||| Sbjct 23612 CTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 23662 >seq11548 Length=265335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || ||||| || || || | || || Sbjct 39781 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTC 39722 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| |||||||| |||||||||||||| | ||| | || ||| |||||| Sbjct 39721 CAGCTGCTTGCCGGCAAATATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 39662 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| || | ||| | | | || ||| ||| || |||| ||||| | | Sbjct 39661 GATTTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCT 39603 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || |||| || || |||||||| |||||| Sbjct 39602 TGCCAGTCAAGGTCTTCACAAAGATCTGCATC 39571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || |||||||| || || || || || || ||||| || || | || || Sbjct 38857 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCCTC 38798 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || || ||||||||||| | || | || ||| |||||| Sbjct 38797 GAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 38738 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | || || |||||||| || | ||||| | || Sbjct 38737 GATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 38678 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||||||||| ||||||| Sbjct 38677 GCCGGTGAGGGTCTTAACAAAGATCTGCATCT 38646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || | ||| | ||||| || || |||||||| || || || || || || ||| Sbjct 39570 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 39511 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || || || ||||| ||||| || || ||||||||||| | ||| Sbjct 39510 AGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCCGGGGGA 39451 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTC 39233 | || ||| |||||| ||| || |||| ||| | | | || || ||| ||| Sbjct 39450 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAGCT---CTC 39395 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || |||| || || |||| || || || || || || ||||| |||||| Sbjct 39394 AACCTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 39343 >seq12936 Length=140512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| || || || || || ||||| || || || || |||| |||||||| Sbjct 38437 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTACGCCCGTCCTCAAGCTG 38496 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 38497 CTTGCCGGCAAAAATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 38556 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | || | | | | || || ||||| || |||| ||||| | || || || Sbjct 38557 CGCCTTCACATTGTCGATAGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCGGT 38616 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 ||||| || || ||||| |||||| Sbjct 38617 GAGCGTCTTCACGAAGATCTGCATC 38641 >seq12418 Length=36051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || || || || ||| |||| ||||| | || || ||||| Sbjct 33131 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGTCCGTCCTCAAGTTCCTTACCAGCAAA 33190 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| ||| || | | Sbjct 33191 GATTAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 33250 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || ||||||||| |||| ||||| | |||| ||||| || || || Sbjct 33251 GTCAATAGTGTCAGACGACTCCACCTCCAGGGTGATGGTCTTTCTGGTCAGGGTCTTCAC 33310 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 33311 AAAGATCTGCAT 33322 >seq12070 Length=146516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || || || || || || | || || Sbjct 65913 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 65972 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 65973 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 66032 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | ||| | | | ||| || ||||| || || | ||| || | | Sbjct 66033 GATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTAATGGTCT 66091 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || || || ||||| ||||||| Sbjct 66092 TGCCGGTGAGGGTCTTCACGAAGATCTGCATCT 66124 >seq9352 Length=67289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || |||||||| || || | Sbjct 47162 GCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCC 47221 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || || ||||||||||| | ||| | || ||| || Sbjct 47222 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 47281 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || ||||| || || | |||| Sbjct 47282 GTCCTGGATCTT-TGCCTTCACGTTGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGA 47340 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || ||||| || ||||| Sbjct 47341 TGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 47377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429454321023068