Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12418 111 1e-19 seq12936 100 2e-16 seq11736 98.7 7e-16 seq11548 98.7 7e-16 seq12004 93.3 3e-14 seq8356 93.3 3e-14 seq9352 89.7 3e-13 >seq12418 Length=36051 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||||||||| || |||||||| || || || || ||||| ||||| || ||| | | Sbjct 33775 TGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATTACTCTTGAAGTCGAGTCCTCTG 33716 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||||| | || | |||| || ||| ||||| |||||| | || || || || | Sbjct 33715 ACACTATCGATAATGTAAAGGCGAAGATTTAGGACAAGGAAGGTATCCCTCCGGACCAGC 33656 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 |||| || || || || ||||| || || || || | || || || | || ||||||| Sbjct 33655 AGCGGTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCTTGGCTGACTACAACA 33596 Query 23792 TACAAAAAGAGTCCAC 23807 | || || |||||||| Sbjct 33595 TTCAGAAGGAGTCCAC 33580 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || | ||| | || ||||| || ||||| || || |||| ||| | Sbjct 33548 ATGCAGATCTTTGTGACGACCTTGACTGGAAAGACCATCACACTGGAGATTGAGTCCTC- 33490 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | ||| | || | || | || ||||| || || | || | || || Sbjct 33489 -ACACAATCAACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGCATTCCACTGGACCA 33432 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || |||||||| || || || || || | ||||| || | |||||||| Sbjct 33431 ACAGCGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCTTGGCTGATTACAA 33372 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 33371 CATTCAGAAAGAGTCCAC 33354 >seq12936 Length=140512 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || || | Sbjct 39096 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 39037 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || ||||| ||||| | || ||||| || Sbjct 39036 GACACGATTGACAATGTCAAGGCAAAGA-TTCAGGACAAGGAAGGAATTCCTCCAGACCA 38978 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || || || ||||| || || || |||| || || | | |||||||| Sbjct 38977 GCAACGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGGCGTACGCTTGCAGATTACAA 38918 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| ||||| |||||||| || || Sbjct 38917 CATTCAAAAGGAGTCCACCTTGCA 38894 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || |||||| | || || || || | Sbjct 38640 ATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 38581 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 38580 GACACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 38522 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| || || | | |||||||| Sbjct 38521 GCAGCGCCTCATTTTTGCCGGCAAGCAGCTTGAGGACGGGCGTACCCTGGCGGATTACAA 38462 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 38461 CATCCAGAAGGAATCCAC 38444 >seq11736 Length=148999 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| |||||||| || || || ||||||||||| || || | | Sbjct 9776 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 9835 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || || ||||| || || | || || || || Sbjct 9836 GACACTATTGACAATGTCAAAGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 9894 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| ||||| || |||| ||||| | | || ||||| Sbjct 9895 GCAGAGGCTCATCTTTGCTGGCAAGCAACTAGAGGACGGCCGCACCCTGGCTGACTACAA 9954 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 9955 CATTCAGAAGGAGTCTAC 9972 >seq11548 Length=265335 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || |||||||| || ||||| | | Sbjct 39572 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTCC 39631 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| ||||| || || | || || || || Sbjct 39632 GACACCATTGACAACGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 39691 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | |||||||||||||| || ||||| || | ||||| | | ||| |||||| Sbjct 39692 CAGCGTCTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 39751 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 39752 ATCCAGAAGGAGTCCAC 39768 >seq12004 Length=146743 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || ||||| || || ||||| ||| | Sbjct 145171 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACACTAGAGGTTGAGTCCTCA 145230 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || || || || Sbjct 145231 GACACAATCGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGCATTCCACCGGACCA 145289 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||| |||| || ||||| Sbjct 145290 GCAGCGTCTCATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACCTTAGCTGACTACAA 145349 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 145350 CATTCAGAAAGAGTCCAC 145367 >seq8356 Length=84350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| || || || || || | Sbjct 46708 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACAATCACCCTTGAGGTGGAGTCATCC 46767 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || || || || || | || ||||| || Sbjct 46768 GACACAATTGATAATGTCAAGGCAAAGA-TTCAGGATAAGGAGGGAATTCCACCAGAGCA 46826 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || ||||| ||||| || ||||| || | ||||| | | || ||||| Sbjct 46827 GCAGCAGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACGATTGCTGACTACAA 46886 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 46887 CATTCAGAAAGAGTCCAC 46904 >seq9352 Length=67289 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||| || || ||||| ||| || Sbjct 47377 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 47318 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| || || | || || || || Sbjct 47317 GACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 47258 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || || | || || | | ||| |||||| Sbjct 47257 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCCGACTACAAC 47198 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 47197 ATCCAGAAGGAGTCCAC 47181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337937772537488