Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9737 100 4e-16 seq7477 95.1 2e-14 >seq9737 Length=173456 Score = 100 bits (110), Expect = 4e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||| || | ||| |||| | || ||| |||| ||| ||| Sbjct 49272 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCCG 49331 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| |||||||||||||| ||| ||||| ||| | || |||||||| || || Sbjct 49332 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATATTGTGGATTGAG 49391 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC---AATGTATCGTAG 78335 | || |||||||| || || ||| | ||| || || | | ||||| || Sbjct 49392 ACACCAATTCCTCCAGCAGATTTGCTTATCACAGC---ACATTCCGAGAGAGTATCATAA 49448 Query 78336 ATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || ||||| ||||| ||||| ||||| | ||| ||||||||| Sbjct 49449 ATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 49493 >seq7477 Length=85115 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | | ||| || | ||| || Sbjct 75789 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATAGGTACAATTCCA 75730 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||||||||||||||| ||| ||||| ||| | || |||||||| || || Sbjct 75729 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 75670 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || |||| ||||| || || Sbjct 75669 ACGCCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAAATT 75610 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 75609 CCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAGCTA 75568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694517396935040